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GenomicState

This is the development version of GenomicState; for the stable release version, see GenomicState.

Build and access GenomicState objects for use with derfinder tools from sources like Gencode


Bioconductor version: Development (3.23)

This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.

Author: Leonardo Collado-Torres [aut, cre] ORCID iD ORCID: 0000-0003-2140-308X

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("GenomicState")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomicState")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicState")
Introduction to GenomicState HTML R Script
Reference Manual PDF
NEWS Text

Details

Version 0.99.17
License Artistic-2.0
Depends AnnotationHub
System Requirements
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Linking To
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Follow Installation instructions to use this package in your R session.

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