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OrganismDbi

This is the development version of OrganismDbi; for the stable release version, see OrganismDbi.

Software to enable the smooth interfacing of different database packages


Bioconductor version: Development (3.23)

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

Author: Marc Carlson [aut], Martin Morgan [aut], Valerie Obenchain [aut], Aliyu Atiku Mustapha [ctb] (Converted 'OrganismDbi' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("OrganismDbi")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("OrganismDbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OrganismDbi")
OrganismDbi: A meta framework for Annotation Packages HTML R Script
Reference Manual PDF
NEWS Text

Details

Version 1.53.2
In Bioconductor since BioC 2.11 (R-2.15) (13 years)
License Artistic-2.0
Depends R (>= 2.14.0), BiocGenerics(>= 0.15.10), AnnotationDbi(>= 1.33.15), Seqinfo, GenomicFeatures(>= 1.61.4)
Imports methods, utils, stats, DBI, BiocManager, Biobase, graph, RBGL, S4Vectors, IRanges, GenomicRanges(>= 1.61.1)
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OrganismDbi_1.53.2.tar.gz
Windows Binary (x86_64) OrganismDbi_1.53.2.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/OrganismDbi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OrganismDbi
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