Ibex

This is the development version of Ibex; for the stable release version, see Ibex.

Methods for BCR single-cell embedding

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DOI: 10.18129/B9.bioc.Ibex

Bioconductor version: Development (3.23)

Implementation of the Ibex algorithm for single-cell embedding based on BCR sequences. The package includes a standalone function to encode BCR sequence information by amino acid properties or sequence order using tensorflow-based autoencoder. In addition, the package interacts with SingleCellExperiment or Seurat data objects.

Author: Nick Borcherding [aut, cre]

Maintainer: Nick Borcherding <ncborch at gmail.com>

Citation (from within R, enter citation("Ibex")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Ibex")

For older versions of R, please refer to the appropriate Bioconductor release.