Data Structures for Single Cell Data [R package SeuratObject version 5.2.0]

SeuratObject: Data Structures for Single Cell Data

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.201505002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019年05月03日1>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021年04月04日8> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.

Version: 5.2.0

Depends: R (≥ 4.1.0), sp (≥ 1.5.0)

Imports: future, future.apply, generics, grDevices, grid, lifecycle, Matrix (≥ 1.6.4), methods, progressr, Rcpp (≥ 1.0.5), rlang (≥ 0.4.7), spam, stats, tools, utils

LinkingTo: Rcpp, RcppEigen

Suggests: BPCells, DelayedArray, fs (≥ 1.5.2), sf (≥ 1.0.0), ggplot2, HDF5Array, rmarkdown, testthat

Published: 2025年08月27日

DOI: 10.32614/CRAN.package.SeuratObject

Author: Paul Hoffman ORCID iD [aut], Rahul Satija ORCID iD [aut, cre], David Collins ORCID iD [aut], Yuhan Hao ORCID iD [aut], Austin Hartman ORCID iD [aut], Gesmira Molla ORCID iD [aut], Andrew Butler ORCID iD [aut], Tim Stuart ORCID iD [aut], Madeline Kowalski ORCID iD [ctb], Saket Choudhary ORCID iD [ctb], Skylar Li [ctb], Longda Jiang ORCID iD [ctb], Anagha Shenoy ORCID iD [ctb], Jeff Farrell [ctb], Shiwei Zheng ORCID iD [ctb], Christoph Hafemeister ORCID iD [ctb], Patrick Roelli [ctb]

Maintainer: Rahul Satija <seurat at nygenome.org>

BugReports: https://github.com/satijalab/seurat-object/issues

License: MIT + file LICENSE

URL: https://satijalab.github.io/seurat-object/, https://github.com/satijalab/seurat-object

NeedsCompilation: yes

Additional_repositories: https://bnprks.r-universe.dev

Materials: NEWS

In views: Omics

CRAN checks: SeuratObject results