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mumosa (development version)

mumosa

This is the development version of mumosa; for the stable release version, see mumosa.

Multi-Modal Single-Cell Analysis Methods

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DOI: 10.18129/B9.bioc.mumosa

Bioconductor version: Development (3.23)

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("mumosa")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mumosa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mumosa")

Overview HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, RNASeq, SingleCell, Software

Version 1.19.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License GPL-3

Depends SingleCellExperiment

Imports stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot

System Requirements

URL http://bioconductor.org/packages/mumosa

Bug Reports https://support.bioconductor.org/

See More

Suggests testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mumosa_1.19.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/mumosa

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mumosa

Bioc Package Browser https://code.bioconductor.org/browse/mumosa/

Package Short Url https://bioconductor.org/packages/mumosa/

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