To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

In most cases, you don't need to download the package archive at all.

graph

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.4

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("graph")
PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF Reference Manual

Details

biocViews GraphAndNetwork, Software
Version 1.52.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12 years)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports stats, stats4, utils
LinkingTo
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
SystemRequirements
Enhances Rgraphviz
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, FEM, flowMerge, gaggle, gaucho, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, NCIgraph, NetSAM, pathRender, Pigengene, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCy3, RCyjs, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, ToPASeq, topGO, vtpnet, yeastExpData
Imports Me alpine, AnalysisPageServer, BgeeDB, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, ChIPpeakAnno, CHRONOS, CytoML, DEGraph, DEsubs, EnrichmentBrowser, FEM, flowCL, flowClust, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GENESIS, GOFunction, GOSim, GOstats, GraphAT, graphite, gwascat, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, mirIntegrator, mvGST, NCIgraph, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, RGraph2js, rsbml, Rtreemix, SplicingGraphs, Streamer, VariantFiltering
Suggests Me AnnotationDbi, BiocCaseStudies, DEGraph, EBcoexpress, ecolitk, GeneAnswers, KEGGlincs, mmnet, MmPalateMiRNA, netbenchmark, NetPathMiner, rBiopaxParser, rTRM, S4Vectors, SPIA, VariantTools
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graph_1.52.0.tar.gz
Windows Binary graph_1.52.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) graph_1.52.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/graph/tree/release-3.4
Package Short Url http://bioconductor.org/packages/graph/
Package Downloads Report Download Stats

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