This package is for version 3.13 of Bioconductor;
for the stable, up-to-date release version, see
affy.
Methods for Affymetrix Oligonucleotide Arrays
Bioconductor version: 3.13
The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
Author: Rafael A. Irizarry <rafa at ds.harvard.edu>, Laurent Gautier <lgautier at gmail.com>, Benjamin Milo Bolstad <bmb at bmbolstad.com>, and Crispin Miller <cmiller at picr.man.ac.uk> with contributions from Magnus Astrand <Magnus.Astrand at astrazeneca.com>, Leslie M. Cope <cope at mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad Halling <challing at agilixcorp.com>, Wolfgang Huber, James MacDonald <jmacdon at u.washington.edu>, Benjamin I. P. Rubinstein, Christopher Workman <workman at cbs.dtu.dk>, John Zhang
Maintainer: Rafael A. Irizarry <rafa at ds.harvard.edu>
Citation (from within R, enter citation("affy")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affy")
Details
Version
1.70.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 19 years)
License
LGPL (>= 2.0)
System Requirements
See More
Enhances
Depends On Me
affyContam,
affydata,
AffyExpress,
affyPara,
affyPLM,
affyQCReport,
AffyRNADegradation,
AgiMicroRna,
ALLMLL,
altcdfenvs,
AmpAffyExample,
arrayMvout,
ArrayTools,
bgx,
bronchialIL13,
ccTutorial,
ChimpHumanBrainData,
CLL,
Cormotif,
curatedBladderData,
curatedOvarianData,
DrugVsDisease,
dualKS,
ecoliLeucine,
ExiMiR,
farms,
frmaTools,
gcrma,
Hiiragi2013,
logitT,
maPredictDSC,
MAQCsubset,
MAQCsubsetAFX,
maskBAD,
mvoutData,
panp,
prebs,
PREDAsampledata,
qpcrNorm,
RefPlus,
Risa,
RPA,
SCAN.UPC,
SpikeIn,
SpikeInSubset,
sscore,
webbioc,
XhybCasneuf
Imports Me
affycoretools,
affyILM,
affylmGUI,
affyQCReport,
arrayQualityMetrics,
ArrayTools,
bnem,
CAFE,
ChIPXpress,
coexnet,
Cormotif,
crossmeta,
DeSousa2013,
Doscheda,
farms,
ffpe,
frma,
gcrma,
GEOsubmission,
Harshlight,
HTqPCR,
iCheck,
lumi,
makecdfenv,
mimager,
MSnbase,
PECA,
plier,
puma,
pvac,
rat2302frmavecs,
rCGH,
Rnits,
signatureSearchData,
STATegRa,
tilingArray,
TurboNorm,
vsn
Suggests Me
AnnotationForge,
ArrayExpress,
arrays,
autonomics,
beadarray,
beadarraySNP,
BiocCaseStudies,
BiocGenerics,
Biostrings,
BufferedMatrixMethods,
categoryCompare,
ecolitk,
estrogen,
ExpressionView,
factDesign,
ffpeExampleData,
GeneRegionScan,
limma,
made4,
piano,
PREDA,
qcmetrics,
runibic,
siggenes,
TCGAbiolinks
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/affy
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/affy