iCheck

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see iCheck.

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: 3.13

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Citation (from within R, enter citation("iCheck")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")

iCheck PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel

Version 1.22.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License GPL (>= 2)

Depends R (>= 3.2.0), Biobase, lumi, gplots

Imports stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCheck_1.22.0.tar.gz

Windows Binary iCheck_1.22.0.zip

macOS 10.13 (High Sierra) iCheck_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iCheck

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCheck

Bioc Package Browser https://code.bioconductor.org/browse/iCheck/

Package Short Url https://bioconductor.org/packages/iCheck/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive