ExpressionView

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ExpressionView.

Visualize biclusters identified in gene expression data

DOI: 10.18129/B9.bioc.ExpressionView

Bioconductor version: 3.13

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Citation (from within R, enter citation("ExpressionView")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ExpressionView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization

Version 1.44.0

In Bioconductor since BioC 2.6 (R-2.11) (14 years)

License GPL (>= 2)

Depends caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi

Imports methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi

System Requirements

URL

Suggests ALL, hgu95av2.db, biclust, affy

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/ExpressionView

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExpressionView

Package Short Url https://bioconductor.org/packages/ExpressionView/

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Old Source Packages for BioC 3.13 Source Archive