To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")

In most cases, you don't need to download the package archive at all.

Rgraphviz

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Rgraphviz.

Provides plotting capabilities for R graph objects

Bioconductor version: 2.8

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package. Users on all platforms must install graphviz; see the README file, available in the source distribution of this file, for details.

Author: Jeff Gentry <jgentry at jimmy.harvard.edu>, Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sfalcon at fhcrc.org>, Florian Hahne <fhahne at fhcrc.org>, Deepayan Sarkar <dsarkar at fhcrc.org>, Kasper Hansen <khansen at stat.berkeley.edu>

Maintainer: Kasper Hansen <khansen at stat.berkeley.edu>

Citation (from within R, enter citation("Rgraphviz")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Rgraphviz")
PDF newRgraphvizInterface.pdf
PDF Rgraphviz.pdf
PDF Reference Manual

Details

biocViews GraphsAndNetworks, Software
Version 1.30.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.6.0), methods, utils, graph, grid
Imports graph, graphics, grDevices, grid, methods, utils
LinkingTo
Suggests
SystemRequirements Graphviz version>= 2.2
Enhances
URL
Depends On Me biocGraph, BioMVCClass, hyperdraw, KEGGgraph, nem, pathRender, TDARACNE
Imports Me apComplex, biocGraph, DEGraph, GeneAnswers, nem
Suggests Me altcdfenvs, BiocCaseStudies, Category, DEGraph, flowCore, geneplotter, globaltest, GOstats, GSVA, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pkgDepTools, RBGL, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, topGO
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rgraphviz_1.30.1.tar.gz
Windows Binary Rgraphviz_1.30.1.zip (32-bit only)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Rgraphviz/tree/release-2.8
Package Short Url http://bioconductor.org/packages/Rgraphviz/
Package Downloads Report Download Stats

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