To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

In most cases, you don't need to download the package archive at all.

graph

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 2.8

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Seth Falcon <sfalcon at fhcrc.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("graph")
PDF clusterGraph.pdf
PDF graph.pdf
PDF graphAttributes.pdf
PDF GraphClass.pdf
PDF MultiGraphClass.pdf
PDF Reference Manual

Details

biocViews GraphsAndNetworks, Software
Version 1.30.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.6.0), methods
Imports methods, stats, tools, utils
LinkingTo
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
SystemRequirements
Enhances Rgraphviz
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, gage, gaggle, GOstats, GraphAT, GSEABase, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, NCIgraph, nem, netresponse, ontoTools, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rredland, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me biocGraph, biocViews, CAMERA, Category, DEGraph, flowCore, flowUtils, GeneAnswers, GOstats, GraphAT, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, PCpheno, pkgDepTools, ppiStats, qpgraph, Rgraphviz, rsbml, Rtreemix, topGO
Suggests Me BiocCaseStudies, Category, DEGraph, ecolitk, GSVA, qpgraph, SPIA
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graph_1.30.0.tar.gz
Windows Binary graph_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/graph/tree/release-2.8
Package Short Url http://bioconductor.org/packages/graph/
Package Downloads Report Download Stats

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