To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOstats")

In most cases, you don't need to download the package archive at all.

GOstats

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GOstats.

Tools for manipulating GO and microarrays.

Bioconductor version: 2.8

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

Citation (from within R, enter citation("GOstats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOstats")

PDF GOstatsForUnsupportedOrganisms.pdf

PDF GOstatsHyperG.pdf

PDF GOvis.pdf

PDF Reference Manual

Details

biocViews Annotation, Bioinformatics, GO, MultipleComparisons, Software

Version 2.18.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)

License Artistic-2.0

Depends Biobase(>= 1.15.29), Category(>= 2.3.26), graph

Imports AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats

LinkingTo

Suggests hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM

SystemRequirements

Enhances

URL

Depends On Me attract, oneChannelGUI

Imports Me affycoretools, attract

Suggests Me BiocCaseStudies, eisa, GSEAlm, HTSanalyzeR, MLP, phenoDist, qpgraph, safe

Build Report