To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("altcdfenvs")

In most cases, you don't need to download the package archive at all.

altcdfenvs

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see altcdfenvs.

alternative CDF environments (aka probeset mappings)

Bioconductor version: 2.8

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("altcdfenvs")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("altcdfenvs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("altcdfenvs")
PDF altcdfenvs.pdf
PDF modify.pdf
PDF ngenomeschips.pdf
PDF Reference Manual

Details

biocViews Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version 2.14.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL (>= 2)
Depends R (>= 2.7), methods, Biobase, affy, makecdfenv, Biostrings, hypergraph
Imports
LinkingTo
Suggests plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me Harshlight
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source altcdfenvs_2.14.0.tar.gz
Windows Binary altcdfenvs_2.14.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/altcdfenvs/tree/release-2.8
Package Short Url http://bioconductor.org/packages/altcdfenvs/
Package Downloads Report Download Stats

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