CGD Paper


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Garcia-Sanchez S, Mavor AL, Russell CL, Argimon S, Dennison P, Enjalbert B, Brown AJ (2005) Global roles of Ssn6 in Tup1- and Nrg1-dependent gene regulation in the fungal pathogen, Candida albicans. Mol Biol Cell 16(6):2913-25
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Abstract:In budding yeast, Tup1 and Ssn6/Cyc8 form a corepressor that regulates a large number of genes. This Tup1-Ssn6 corepressor appears to be conserved from yeast to man. In the pathogenic fungus Candida albicans, Tup1 regulates cellular morphogenesis, phenotypic switching, and metabolism, but the role of Ssn6 remains unclear. We show that there are clear differences in the morphological and invasive phenotypes of C. albicans ssn6 and tup1 mutants. Unlike Tup1, Ssn6 depletion promoted morphological events reminiscent of phenotypic switching rather than filamentous growth. Transcript profiling revealed minimal overlap between the Ssn6 and Tup1 regulons. Hypha-specific genes, which are repressed by Tup1 and Nrg1, were not derepressed in ssn6 cells under the conditions studied. In contrast, the phase specific gene WH11 was derepressed in ssn6 cells, but not in tup1 or nrg1 cells. Hence Ssn6 and Tup1 play distinct roles in C. albicans. Nevertheless, both Ssn6 and Tup1 were required for the Nrg1-mediated repression of an artificial NRE promoter, and lexA-Nrg1 mediated repression in the C. albicans one-hybrid system. These observations are explained in models that are generally consistent with the Tup1-Ssn6 paradigm in budding yeast.
Status: Published Type: Journal article PubMed ID: 15814841


Topics addressed in this paper
There are 190 different genes addressed in this paper.

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Topics
Genes linked to topics(#1-10)
AAH1
(C. albicans)
ACB1
(C. albicans)
ACP1
(C. albicans)
ACS1
(C. albicans)
ADH1
(C. albicans)
ADH2
(C. albicans)
ADH5
(C. albicans)
AGO1
(C. albicans)
AHP1
(C. albicans)
ALD5
(C. albicans)
Filamentous Growth




Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#11-20)
ALS1
(C. albicans)
ALS10
(C. albicans)
ALS3
(C. albicans)
ARC35
(C. albicans)
ASR1
(C. albicans)
ATO2
(C. albicans)
ATP20
(C. albicans)
ATP7
(C. albicans)
AYR2
(C. albicans)
C1_00310W
(C. albicans)
Filamentous Growth



Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#21-30)
C1_01360C
(C. albicans)
C1_01490W
(C. albicans)
C1_01930W
(C. albicans)
C1_03490W
(C. albicans)
C1_05950C
(C. albicans)
C1_11200W
(C. albicans)
C1_11270W
(C. albicans)
C1_14060W
(C. albicans)
C2_00940W
(C. albicans)
C2_02580W
(C. albicans)
Filamentous Growth



Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation
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Topics
Genes linked to topics(#31-40)
C2_07630C
(C. albicans)
C2_08390W
(C. albicans)
C2_10300C
(C. albicans)
C3_00030C
(C. albicans)
C3_00230C
(C. albicans)
C3_01420C
(C. albicans)
C3_01540W
(C. albicans)
C3_03410C
(C. albicans)
C4_00170W
(C. albicans)
C5_01070C
(C. albicans)
Filamentous Growth



Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#41-50)
C5_03480C
(C. albicans)
C6_00920W
(C. albicans)
C7_01430C
(C. albicans)
C7_01940C
(C. albicans)
CAN2
(C. albicans)
CAR1
(C. albicans)
CAT1
(C. albicans)
CCC1
(C. albicans)
CDR4
(C. albicans)
CEK1
(C. albicans)
Filamentous Growth

Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#51-60)
CFL4
(C. albicans)
CHO1
(C. albicans)
CIT1
(C. albicans)
COI1
(C. albicans)
CPH1
(C. albicans)
CRD2
(C. albicans)
CRP1
(C. albicans)
CR_05200C
(C. albicans)
CR_06140W
(C. albicans)
CR_06500C
(C. albicans)
Filamentous Growth




Genetic Interactions








Genome-wide Analysis
RNA Levels and Processing
Regulatory Role








Transcriptional Regulation
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Topics
Genes linked to topics(#61-70)
CUP9
(C. albicans)
CYB2
(C. albicans)
CYB5
(C. albicans)
CYS3
(C. albicans)
DDR48
(C. albicans)
DLD1
(C. albicans)
DOG1
(C. albicans)
EAP1
(C. albicans)
ECE1
(C. albicans)
ECM331
(C. albicans)
Filamentous Growth



Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#71-80)
EFG1
(C. albicans)
EVP1
(C. albicans)
FAD3
(C. albicans)
FBP1
(C. albicans)
FGR22
(C. albicans)
FRE10
(C. albicans)
FRP1
(C. albicans)
FRP6
(C. albicans)
FTR1
(C. albicans)
FTR2
(C. albicans)
Filamentous Growth



Genetic Interactions








Genome-wide Analysis
RNA Levels and Processing
Regulatory Role








Transcriptional Regulation

Topics
Genes linked to topics(#81-90)
GAC2
(C. albicans)
GAP2
(C. albicans)
GAP4
(C. albicans)
GCY1
(C. albicans)
GDB1
(C. albicans)
GLC3
(C. albicans)
GLK1
(C. albicans)
GLX3
(C. albicans)
GPD2
(C. albicans)
GRE2
(C. albicans)
Filamentous Growth



Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation
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Topics
Genes linked to topics(#91-100)
GRP2
(C. albicans)
GST2
(C. albicans)
GSY1
(C. albicans)
HEM1
(C. albicans)
HGT10
(C. albicans)
HGT12
(C. albicans)
HGT19
(C. albicans)
HGT6
(C. albicans)
HGT7
(C. albicans)
HGT8
(C. albicans)
Filamentous Growth




Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#101-110)
HHF1
(C. albicans)
HHF22
(C. albicans)
HNM1
(C. albicans)
HSP12
(C. albicans)
HSP70
(C. albicans)
HWP1
(C. albicans)
HXK2
(C. albicans)
HXT5
(C. albicans)
HYR1
(C. albicans)
IDP2
(C. albicans)
Filamentous Growth


Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#111-120)
IFD7
(C. albicans)
IHD1
(C. albicans)
INO1
(C. albicans)
KIP4
(C. albicans)
KRE1
(C. albicans)
LYS21
(C. albicans)
LYS9
(C. albicans)
MAE1
(C. albicans)
MAM33
(C. albicans)
MET15
(C. albicans)
Alias








Filamentous Growth





Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#121-130)
MLS1
(C. albicans)
MRPL10
(C. albicans)
MRPL37
(C. albicans)
NRG1
(C. albicans)
NTF2
(C. albicans)
OPT1
(C. albicans)
OSM2
(C. albicans)
PCK1
(C. albicans)
PFK2
(C. albicans)
PFY1
(C. albicans)
Filamentous Growth




Genome-wide Analysis
Mutants/Phenotypes








RNA Levels and Processing
Regulatory Role








Strains/Constructs








Transcriptional Regulation

Topics
Genes linked to topics(#131-140)
PGA10
(C. albicans)
PGA13
(C. albicans)
PGA14
(C. albicans)
PGA23
(C. albicans)
PGA45
(C. albicans)
PGA54
(C. albicans)
PGA56
(C. albicans)
PGA59
(C. albicans)
PGA7
(C. albicans)
PHR1
(C. albicans)
Filamentous Growth




Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#141-150)
PLB4
(C. albicans)
PLB4.5
(C. albicans)
PTP3
(C. albicans)
QCR8
(C. albicans)
QCR9
(C. albicans)
RBE1
(C. albicans)
RBT1
(C. albicans)
RBT4
(C. albicans)
RBT5
(C. albicans)
RCT1
(C. albicans)
Filamentous Growth





Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#151-160)
RHR2
(C. albicans)
RIM8
(C. albicans)
RNR22
(C. albicans)
RPL11
(C. albicans)
RPL23A
(C. albicans)
RPL25
(C. albicans)
RPL29
(C. albicans)
RPL30
(C. albicans)
RPL35
(C. albicans)
RPL38
(C. albicans)
Alias








Filamentous Growth
Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#161-170)
RPL39
(C. albicans)
RPL40B
(C. albicans)
RPL42
(C. albicans)
RPL43A
(C. albicans)
RPS18
(C. albicans)
RPS21B
(C. albicans)
RPS22A
(C. albicans)
RPS24
(C. albicans)
RPS26A
(C. albicans)
RPS30
(C. albicans)
Filamentous Growth
Genome-wide Analysis
RNA Levels and Processing
Transcriptional Regulation

Topics
Genes linked to topics(#171-180)
SAP7
(C. albicans)
SNG3
(C. albicans)
SOD1
(C. albicans)
SRG1
(C. albicans)
SSN6
(C. albicans)
STP4
(C. albicans)
TFS1
(C. albicans)
TMA19
(C. albicans)
TOM22
(C. albicans)
TPS3
(C. albicans)
Cross-species Expression








Filamentous Growth
Function/Process








Fungal Related Genes/Proteins








Genetic Interactions








Genome-wide Analysis
Mutants/Phenotypes








Non-Fungal Related Genes/Proteins








Phenotypic Switching








Protein Domains/ Motifs








Protein-Nucleic Acid Interactions








RNA Levels and Processing
Regulatory Role








Strains/Constructs








Techniques and Reagents








Transcriptional Regulation

Topics
Genes linked to topics(#181-190)
TUP1
(C. albicans)
UBI4
(C. albicans)
WH11
(C. albicans)
YKE2
(C. albicans)
YWP1
(C. albicans)
ZCF5
(C. albicans)
orf19.4386
(C. albicans)
orf19.566
(C. albicans)
orf19.6169.2
(C. albicans)
orf19.682
(C. albicans)
Filamentous Growth




Genome-wide Analysis
Mutants/Phenotypes








RNA Levels and Processing
Regulatory Role








Transcriptional Regulation
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