C. albicans orf19.1619 Summary

Last curated 2008年11月18日
See the Literature Guide for most recent publications.

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Summary
Locus History Literature Gene Ontology Phenotype Homologs Protein
orf19.1619 BASIC INFORMATION [ View References ]
Systematic Name, Reference Strain orf19.1619 (C. albicans SC5314)
Alias CTK11
orf19.9187, IPF25612.12 , IPF4233.22 , Contig4-2798_00163 , orf6.64534 , CA40142 , CaO19.16191 , CaO19.91871
Feature Type ORF, Uncharacterized
Description Putative kinase subunit of RNA polymerase II carboxy-terminal domain kinase I; possibly an essential gene, disruptants not obtained by UAU1 method (5)
Literature
Allele Name orf19.9187
Allelic Variation Non-synonymous variation between alleles
Sequence variation between alleles within 100 bp upstream of feature start coordinates
Sequence variation between alleles within 100 bp downstream of feature end coordinates
CUG Codons orf19.1619: 4
orf19.9187: 0
JBrowse

JBrowse for feature orf19.1619

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GO Annotations View all orf19.1619 GO evidence and references

Molecular Function
Manually curated * molecular_function unknown (ND)

Biological Process
Manually curated * biological_process unknown (ND)

Cellular Component
Manually curated * cellular_component unknown (ND)
Mutant Phenotype
NOTE: Phenotypes are no longer recorded for Assembly 21 features
For phenotypes associated with this feature, please see the corresponding Assembly 22 Locus Summary Page
For a list of phenotypes for all Assembly 21 features, plese see the Phenotypes Download Page.
Sequence Information Ca21chr3_C_albicans_SC5314:490943 to 489183 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2011年09月16日 | Sequence: 2007年09月19日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1761490,943to489,1832011年09月16日2007年09月19日

Retrieve Sequences
Sequence Analysis Tools
Sequence Information Ca21chr3_C_albicans_SC5314:490943 to 489183 | JBrowse
Note: this feature is encoded on the Crick strand.
Contig19 Location Ca21chr3_C_albicans_SC5314:490943 to 489183 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2011年09月16日 | Sequence: 2007年09月19日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1761490,943to489,1832011年09月16日2007年09月19日

Contig19 Location Ca21chr3_C_albicans_SC5314:490943 to 489183 | JBrowse
Note: this feature is encoded on the Crick strand.
External Links CGOB | Entrez Gene (1, 2) | Fungal Orthologs | GenBank (1, 2, 3, 4, 5, 6) | Non-periodic Expression | Pedant | PhylomeDB
Primary CGDID CAL0006346
ADDITIONAL INFORMATION for orf19.1619
Locus History Gene/Sequence Resources
REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for orf19.1619]
1) Maglott D, et al. (2007) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31
CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
2) CandidaDB
CGD Papers Entry
3) Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19.
CGD Papers Entry
4) CGD (2005) CGD comparison of orf6 and orf19 predicted protein products.
CGD Papers Entry
5) Mitchell AP (2009) Possibly essential genes; no disruptants obtained by UAU1 method using the BWP17 strain
CGD Papers Entry

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