C. albicans HSM3/C7_03450C Summary

Last curated 2022年12月07日
See the Literature Guide for most recent publications.

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Summary
Locus History Literature Gene Ontology Phenotype Homologs Protein
HSM3 BASIC INFORMATION [ View References ]
Standard Name HSM31
Systematic Name, Reference Strain C7_03450C_A (C. albicans SC5314)
Assembly 19/21 Identifier orf19.1331
Alias orf19.8911, IPF8030.12 , IPF19088.22 , Contig4-3068_00063 , orf6.38844 , orf6.9584 , CA21152 , CaJ7.03965 , CaO19_13316 , CaJ7_03966 , CaO19.13316 , CaO19.89116 , IPF80302 , orf19.1331, C7_03450C_B, C7_03450C
Feature Type ORF, Uncharacterized
Description Ortholog(s) have protein folding chaperone activity, role in mismatch repair, proteasome regulatory particle assembly and cytosol, nucleus localization (7)
Literature
Allele Name C7_03450C_B
Allelic Variation No allelic variation in feature
Sequence variation between alleles within 100 bp upstream of feature start coordinates
CUG Codons C7_03450C_A: 1
C7_03450C_B: 1
Systematic Names Used in Other Strains CAWG_05677 (C. albicans WO-1)
Orthologous genes in Candida species C. auris B8441 Ortholog(s) : B9J08_003789
C. parapsilosis CDC317 Ortholog(s) : CPAR2_703600
C. dubliniensis CD36 Ortholog(s) : Cd36_73090
C. glabrata CBS138 Ortholog(s) : CAGL0I09460g
View ortholog cluster : 16 genes among 16 Candida-related species/strains
Ortholog(s) in non-CGD species S. cerevisiae (HSM3)
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JBrowse for feature C7_03450C_A

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GO Annotations View all HSM3 GO evidence and references

Molecular Function
Manually curated * molecular_function unknown (ND)

Biological Process
Manually curated * biological_process unknown (ND)

Cellular Component
Manually curated * cellular_component unknown (ND)
Mutant Phenotype View all HSM3 Phenotype details and references
Classical genetics
homozygous null * resistance to propolis: decreased

Large-scale survey
heterozygous null * haploinsufficient

homozygous null * viable

null * viable

Sequence Information Ca22chr7A_C_albicans_SC5314:759939 to 758521 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1419759,939to758,5212016年01月21日2014年06月24日

Retrieve Sequences
Sequence Analysis Tools
Maps & Displays
Sequence Information Ca22chr7A_C_albicans_SC5314:759939 to 758521 | JBrowse
Note: this feature is encoded on the Crick strand.
Allele Location
Allele C7_03450C_B 		Ca22chr7B_C_albicans_SC5314:759968 to 758550 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1419759,968to758,5502016年01月21日2014年06月24日

Allele Location
Allele C7_03450C_B Ca22chr7B_C_albicans_SC5314:759968 to 758550 | JBrowse
Note: this feature is encoded on the Crick strand.
External Links BioGRID | CGOB | Entrez Gene (1, 2, 3) | Fungal Orthologs | FungiDB | GenBank (1, 2, 3, 4, 5, 6, 7, 8) | Non-periodic Expression | Pedant | PhylomeDB | SwissProt | Transcription Modules
Primary CGDID CAL0000181303
ADDITIONAL INFORMATION for HSM3
Gene/Sequence Resources
REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for HSM3]
1) Nobile CJ, et al. (2003) Genetic control of chlamydospore formation in Candida albicans. Microbiology 149(Pt 12):3629-37
CGD Papers Entry Pubmed Entry Reference LINKOUT
2) CandidaDB
CGD Papers Entry
3) Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19.
CGD Papers Entry
4) CGD (2005) CGD comparison of orf6 and orf19 predicted protein products.
CGD Papers Entry
5) Chibana H, et al. (2005) Sequence finishing and gene mapping for Candida albicans chromosome 7 and syntenic analysis against the Saccharomyces cerevisiae genome. Genetics 170(4):1525-37
CGD Papers Entry Pubmed Entry Reference LINKOUT
6) Maglott D, et al. (2007) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31
CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
7) CGD (2010) Description lines for gene products, based on orthologs and predicted Gene Ontology (GO) annotations.
CGD Papers Entry

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