Database of Streptomyces-derived Secondary Metabolites

Database of rice (Nipponbare) Tos17 insertion mutant lines

This database collects published data about Asterales needed for elucidating, classification, phylogeny, and evolution.

RDF data of Japan Chemical Substance Dictionary (Nikkaji) described by standard ontologies.

16S RNA sequence set for metagenomic analysis using kraken2.

jPOSTdb is a database containing re-analysis results with unified criteria for proteome data from jPOST repository.

The 'ready-to-dock' database of small chemical compounds, for virtual drug screening on computer docking studies.

ChemTHEATRE is the database that stores monitoring data on all chemical substances.

The database of an integrated information resource of diseases, drugs, and health-related substances, aiming to bring the genomic revolution to society.

The database of gene expression data in each tissue.

The database focuses on nucleic acid drugs known as biopharmaceuticals and displays information on approved drugs and those in four clinical trial phases.

The repository of mass spectrometry (MS) raw data, peak lists and analyzed data.

SPD is the database of proteome, transcriptome and metabolome from soybeans under flood stress.

The reference transcriptomic data from new reference genome data and RNAseq data of multiple tissues in Bombyx mori P50T strain.

It is the dataset for search in GGGenome, a tool for fast and sensitive search for genomic and transcript sequence.

We have made a user dictionary of morphological analysis engine MeCab headwords and synonyms of JST Thesaurus (2015 edition) .

AOE is an index of public gene expression database.

The database on activities of transcripts and transcription factors in various cell species of human and mouse.

A database for detecting similar small-molecule binding sites on proteins

Open access and online review articles written by Japanese authors who published their research outcomes in some top journals.

The collection of review articles written by Japanese authors who lead several biological research areas.

This is a database of body-wide localizations of basement membrane proteins in developing mouse embryos.

Mapping data of Nikkaji No., InChI and InChIKey in Nikkaji (Japan Chemical Substance Dictionary).

The database is a highly structured, manually curated database of signal transduction pathways.

The database of general information, DNA markers, QTLs, DB links and genome analysis methods of plants including model plants.

The database is integrating various microbiological knowledge centered on genome information.

The database of useful images for life science which are published without a fee.

The database of tutorial videos expounding how to use biological databases and tools.

The database of orthologous relationships of genes that are computationally determined according to similarities between amino acid sequences.

The database of collecting and sharing quantitative data of biological dynamics , which are generated from experimental measurement or computer simulation.

The database of the result of analysis processed from the entire ChIP-Seq data archived in Sequence Read Archive.

Database of solubilities of all E.coli proteins translated by using an in vitro translation system, and of chaperone effects on their aggregation.

A database of about 197,000 polymorphisms in Japanese population, with annotations such as genes, positions, amino acid substitutions

The database of information on genes and their related diseases and phenotypes that were obtained from the JST bibliographic information JDream II.

The dictionary-type database for anatomy in which anatomical concepts are represented by 3D structure data that specify corresponding segments of a three-dimensional whole-body model for an adult human male.

A collection of icons (illustrations) of biological species that is free to use and distribute.

The database of information of the academic societies in Japan (organization name, website URL, contact address, etc.)

The database of budding yeast 5'cDNA full length clones.

The database of budding yeast protein-protein interactions obtained from Y2H.

Gene names and gene family names were collected for 9 different organisms (including human, mouse, rat, zebrafish, fruit fly, nematode, budding yeast, fission yeast, Bacillus subtilis), and associated with parallel relationship (synonym) and hierarchical relationship (family name). Acronym notations and IDs of typical gene/genome databases are also treated as names.