General information of database
info Alternative name Rice Expression Database
info Creator
Creator Name:
Shoshi Kikuchi
Link to J-GLOBAL
Link to researchmap
Creator Affiliation:
National Institute of Agrobiological Sciences
info Contact address 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Plant Genome Research Unit
Shoshi Kikuchi
E-mail : red address
info Database classification Plant databases - Rice
info Database classification Microarray, Gene Expression
info Organism
Taxonomy Name:
Oryza sativa
info Database description The Rice Expression Database (RED) is a database that aggregates the gene expression data that has been analyzed using 8987EST array in the Microarray Project that was underway as part of the Rice Genome Project. RED holds raw and normalized data from expression profiles obtained by the Rice Microarray Project and other research groups.
info Features and manner of utilization of database If you are interested in a particular research subject, can find the appropriate "Research ID" from the red_subject_info table. You will then get the experimental data for the selected research.
Also, you can find the Accession number for a particular gene from the red_est table. Then, you will then get expression profiles under various experimental conditions against results of Array-BLAST.
info Background and funding
Name:
Analysis of gene functions in the rice genome by using the gene expression monitoring technique (commonly called as "the Microarray project") (1999-2003)
Link to Life science projects in Japan
info Reference(s)
Article title:
Rice Expression Database: the gateway to rice functional genomics
Author name(s):
Junshi Yazaki, Naoki Kishimoto, Masahiro Ishikawa and Shoshi Kikuchi
Journal:
Trends in Plant Science (2002) Dec 7 (12):563-564
Original website information
info URL of the original website (Closed) http://red.dna.affrc.go.jp/RED/
info Operation start date 2000年10月1日
info Last update date -
info Whole data download -
info Referenced database DDBJ
info Entry list Available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Not available