General information of database
info Alternative name RGP: 332 PCR-based genetic markers on rice chromosomes
info Creator
Creator Name:
Kimiko Yamamoto
Creator Affiliation:
National Institute of Agrobiological Sciences
Creator Name:
Jianzhong Wu
Creator Affiliation:
National Institute of Agrobiological Sciences
Creator Name:
Takuji Sasaki*
Creator Affiliation:
National Institute of Agrobiological Sciences
info Contact address 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Takashi Matsumoto
E-mail : rgp_caps_address
Yuichi Katayose
E-mail : rgp_caps_address2
info Database classification Plant databases - Rice
info Database classification Sequence
PCR-based marker
info Organism
Taxonomy Name:
Oryza sativa
info Database description We have developed 332 PCR-based genetic markers including 161 sequence tagged site (STS) markers and 171 cleaved amplified polymorphic sequence (CAPS) markers.This site shows all information for these markers.
info Features and manner of utilization of database The table (chr 1 to chr 12) summarizes all information for STS and CAPS markers, such as chromosomal location, primer sequences, size of amplified fragment (Nipponbare), restriction enzyme, etc. These markers have been developed to detect polymorphism between Nipponbare (japonica) and Kasalath (indica). Although detection of polymorphism of these markers will depend on the combination of varieties or lines, they may be used for the analysis of other combinations.
Because this archive has been created based on the following data of the last update date, it may not match the data in the current situation.
info Background and funding
Name:
Phase 2 of Rice Genome Research Project (1998-2004)
Link to Life science projects in Japan
Original website information
info URL of the original website (Suspended)http://rgp.dna.affrc.go.jp/E/publicdata/caps/index.html
info Operation start date 2002年02月10日
info Last update date 2002年02月10日
info Whole data download -
info Referenced database -
info Entry list Available
info Query search Not available
info Web services Not available
info URL of Web services -
info Need for user registration Not available