Life Science Database Archive
TMFunction

Database Description

General information of database

info Database name TMFunction
info Alternative name Functional Database of Membrane Proteins
info Creator
Creator Name:
Creator Affiliation:
Indian Institute of Technology Madras
Journal Search:
info Contact address

Dr. M. MICHAEL GROMIHA
Associate Professor
Department of Biotechnology
IIT Madras
Chennai - 600 036
Tel: +91-44-2257-4138(O)
tmfunction address

info Database classification Structure Databases - Protein structure
info Database description

TMFunction is a database of functional residues in alpha-helical and beta-barrel membrane proteins. Each protein is identified with its name and source alongwith the UniProt code. The protein data bank (PDB) codes are also given for available proteins. Different methods and experimental parameters, for example, affinity, dissociation constant, IC50, activity etc. are given in the database. Further, we have provided the numerical experimental value for each residue (or mutant) in a protein. The experimental data are collected from the literature both by searching the journals as well as with the keyword search at PubMed. In addition, complete reference is given with journal citation and PMID number.

info Features and manner of utilization of database

TMFunction is cross-linked with the sequence database, UniProt, structural database, PDB, and literature database, PubMed.

info License CC BY-SA Detail
info Background and funding -
info Reference(s)
Article title:
TMFunction: database for functional residues in membrane proteins.
Author name(s):
Gromiha MM, Yabuki Y, Suresh MX, Thangakani AM, Suwa M, Fukui K.
Journal:
Nucleic Acids Res. 2009 Jan;37(Database issue)

Original website information

info Database maintenance site


*The original website was terminated.

info URL of the original website (Closed) http://tmbeta-genome.cbrc.jp/TMFunction/
info Operation start date 2007/7
info Last update date 2008/9
info URL of the portal site -
info Whole data download -
info Referenced database

UniProt, PDB, PubMed

info Entry list Available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Not available

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