Biobase

Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Author R. Gentleman, V. Carey, M. Morgan, S. Falcon
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("Biobase")

Documentation

Notes for eSet developers PDF R Script
Bioconductor Overview PDF R Script
esApply Introduction PDF R Script
An introduction to Biobase and ExpressionSets PDF R Script
Notes for writing introductory 'how to' documents PDF R Script
quick views of eSet instances PDF R Script
Reference Manual

Details

biocViews
Depends
R , methods , utils
Imports
Suggests
tools , tkWidgets , ALL
System Requirements
License Artistic-2.0
URL
Depends On Me
ABarray , adSplit , affy , affycomp , affyContam , affycoretools , affylmGUI , affyPLM , affyQCReport , AffyTiling , Agi4x44PreProcess , altcdfenvs , annaffy , AnnotationDbi , annotationTools , ArrayExpress , arrayMvout , ArrayTools , beadarray , beadarraySNP , bgx , BicARE , BiocCaseStudies , bioDist , BioMVCClass , Category , cellHTS , cellHTS2 , CGHbase , CGHregions , clusterStab , CMA , codelink , convert , copa , DFP , dualKS , dyebias , EBarrays , ecolitk , edd , edgeR , factDesign , flowClust , flowCore , gaga , gcrma , GeneMeta , geneplotter , geneRecommender , GeneRegionScan , GeneSelectMMD , GeneSelector , GeneSpring , GeneTraffic , genomeIntervals , GEOquery , GGBase , GGtools , goProfiles , GOstats , GSEABase , GSEAlm , HELP , HEM , hopach , idiogram , iterativeBMA , LMGene , lumi , macat , maDB , makecdfenv , maSigPro , MCRestimate , MergeMaid , Mfuzz , MiPP , MLInterfaces , multtest , oligoClasses , OLIN , oneChannelGUI , ontoTools , OrderedList , OutlierD , PAnnBuilder , panp , pcaMethods , pcot2 , pdInfoBuilder , pdmclass , PGSEA , plgem , PLPE , prada , puma , qpcrNorm , qpgraph , RbcBook1 , rbsurv , reb , RefPlus , Resourcerer , rHVDM , Ringo , RMAGEML , Rmagpie , RpsiXML , Rtreemix , safe , siggenes , simpleaffy , SNPchip , spkTools , splicegear , stam , tilingArray , timecourse , topGO , tspair , twilight , vsn , webbioc , XDE
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source Biobase_2.4.1.tar.gz
Windows binary Biobase_2.4.1.zip
MacOS X 10.4 (Tiger) binary Biobase_2.4.1.tgz
MacOS X 10.5 (Leopard) binary Biobase_2.4.1.tgz
Package Downloads Report Downloads Stats

AltStyle によって変換されたページ (->オリジナル) /