siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author Holger Schwender

Maintainer Holger Schwender

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("siggenes")

Documentation

siggenes Manual	PDF	R Script
siggenesRnews.pdf	PDF	R Script
Reference Manual

Details

System Requirements
biocViews	Statistics , MultipleComparisons , Microarray , GeneExpression , SNP , ExonArray , DifferentialExpression
Depends	methods , multtest , Biobase , splines
Imports
Suggests	affy , annotate , genefilter , KernSmooth , scrime
License	LGPL version 2 or newer
URL
Depends On Me	KCsmart
Imports Me
Suggests Me	GeneSelector , logicFS , oneChannelGUI , XDE
Development History	Bioconductor Changelog

Package Downloads

Package source	siggenes_1.18.0.tar.gz
Windows binary	siggenes_1.18.0.zip
MacOS X 10.4 (Tiger) binary	siggenes_1.18.0.tgz
MacOS X 10.5 (Leopard) binary	siggenes_1.18.0.tgz
Package Downloads Report	Downloads Stats