topGO

topGO: Enrichment analysis for Gene Ontology

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author Adrian Alexa, Jorg Rahnenfuhrer

Maintainer Adrian Alexa

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("topGO")

Documentation

topGO	PDF	R Script
Reference Manual

Details

System Requirements
biocViews	Microarray , Bioinformatics , Visualization
Depends	R , methods , graph , Biobase , GO.db , AnnotationDbi , SparseM
Imports	methods , graph , Biobase , SparseM , AnnotationDbi , lattice
Suggests	ALL , hgu95av2.db , hgu133a.db , genefilter , xtable , multtest , Rgraphviz , globaltest
License	LGPL
URL
Depends On Me	RNAither
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	topGO_1.12.0.tar.gz
Windows binary	topGO_1.12.0.zip
MacOS X 10.4 (Tiger) binary	topGO_1.12.0.tgz
MacOS X 10.5 (Leopard) binary	topGO_1.12.0.tgz
Package Downloads Report	Downloads Stats