lumi

BeadArray Specific Methods for Illumina Microarrays

The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level.

Author Pan Du, Gang Feng, Warren Kibbe, Simon Lin

Maintainer Pan Du

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("lumi")

Documentation

Bioc2007_lumi_presentation.pdf	PDF
lumi	PDF	R Script
lumi	PDF	R Script
lumi	PDF	R Script
Reference Manual

Details

System Requirements
biocViews	Microarray , OneChannel , Preprocessing
Depends	R , annotate , affy , Biobase , mgcv , methods , preprocessCore , RSQLite
Imports
Suggests	beadarray , limma , vsn , lumiBarnes , lumiHumanAll.db , lumiHumanIDMapping , genefilter , RColorBrewer
License	LGPL version 2 or newer
URL
Depends On Me	arrayMvout
Imports Me
Suggests Me	beadarray
Development History	Bioconductor Changelog

Package Downloads

Package source	lumi_1.10.2.tar.gz
Windows binary	lumi_1.10.2.zip
MacOS X 10.4 (Tiger) binary	lumi_1.10.2.tgz
MacOS X 10.5 (Leopard) binary	lumi_1.10.2.tgz
Package Downloads Report	Downloads Stats