馬場 知哉

論文

• Hybridization-capture sequencing combined with iterative matrix reduction for SARS-CoV-2 variant estimation in wastewater genomic surveillance

  Ryo Honda, Hiroya Kamoshida, Daisuke Motooka, Akihiko Hata, Rongxuan Wang, Takashi Tamura, Satoshi Ezaki, Tomoya Baba, Masanori Arita

  Journal of Environmental Chemical Engineering 14(5) 124267 2026年8月4日 査読有り
• Mesoporous Silica Provides a Platform for Robust Amplification of Single-Copy RNA

  Shun-ichi Matsuura, Tomoya Baba, Nozomi Natsui, Shiori Abe, Liangjing Jin, Aritomo Yamaguchi

  ACS Applied Bio Materials 9(4) 2107-2117 2026年1月29日 査読有り筆頭著者
• Dissemination of local sub-variants of SARS-CoV-2 detected by detailed mutation analysis in wastewater-based epidemiology

  Ryo Honda, Takashi Abe, Tomoya Baba, Yui Araki, Tomohiro Kuroita, Ryo Iwamoto, Mayo Ito, Nami Okamura, Marie Kenza Yousri, Takashi Tamura …

  PLOS One 20(5) e0317076-e0317076 2025年5月28日 査読有り
• Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces

  Yuh Shiwa, Tomoya Baba, Maria A. Sierra, JangKeun Kim, Christopher E. Mason, Haruo Suzuki

  BMC Research Notes 16(1) 142 2023年7月7日 査読有り
• Highly Precise and Sensitive Polymerase Chain Reaction Using Mesoporous Silica-Immobilized Enzymes

  Shun-ichi Matsuura, Tomoya Baba, Takuji Ikeda, Katsutoshi Yamamoto, Tatsuo Tsunoda, Aritomo Yamaguchi

  ACS Applied Materials & Interfaces 14(26) 29483-29490 2022年6月14日 査読有り
• 最小ゲノム —細胞が生きるために必要な遺伝子数はいくつか—

  馬場知哉, 柿澤茂行, 森 宙史, 車 兪澈, 黒川 顕, 大島 拓

  地学雑誌 129(6) 805-824 2020年12月25日 筆頭著者
• Batch-Learning Self-Organizing Map Identifies Horizontal Gene Transfer Candidates and Their Origins in Entire Genomes

  Takashi Abe, Yu Akazawa, Atsushi Toyoda, Hironori Niki, Tomoya Baba

  Frontiers in Microbiology 11(July) Article-1486 2020年7月3日 査読有り最終著者責任著者
• Essential cellular modules for the proliferation of the primitive cell

  Koichi Higashi, Yoshikazu Kawai, Tomoya Baba, Ken Kurokawa, Taku Oshima

  Geoscience Frontiers 9(4) 1155-1161 2018年7月1日 査読有り
• Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria.

  Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Tomoya Baba, Miyuki Nishijima, Fatma Karray, Sami Sayadi, Hiroko Isoda, Takeshi Naganuma, Hironori Niki

  Standards in genomic sciences 11 Article-90 2016年 査読有り
• Complete genome sequence of Aurantimicrobium minutum type strain KNCT, a planktonic ultramicrobacterium isolated from river water

  Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Hiroyo Nishide, Ikuo Uchiyama, Tomoya Baba, Atsushi Toyoda, Asao Fujiyama, Takeshi Naganuma, Hironori Niki

  Genome Announcements 4(3) e00616-16 2016年 査読有り
• Aurantimicrobium minutum gen. nov., sp nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water

  Ryosuke Nakai, Tomoya Baba, Hironori Niki, Miyuki Nishijima, Takeshi Naganuma

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 65 4072-4079 2015年11月 査読有り
• Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12

  Mori H, Baba T, Yokoyama K, Takeuchi R, Nomura W, Makishi K, Otsuka Y, Dose H, Wanner BL

  Methods Mol Biol. 1279 45-65 2015年1月
• Nanoporous scaffold for DNA polymerase: pore-size optimisation of mesoporous silica for DNA amplification

  Shun-ichi Matsuura, Tomoya Baba, Manami Chiba, Tatsuo Tsunoda

  RSC ADVANCES 4(49) 25920-25923 2014年 査読有り
• Diversity of RuBisCO gene responsible for CO2 fixation in an Antarctic moss pillar

  Ryosuke Nakai, Takashi Abe, Tomoya Baba, Satoshi Imura, Hiroshi Kagoshima, Hiroshi Kanda, Yuji Kohara, Akiko Koi, Hironori Niki, Katsuhiko Yanagihara …

  POLAR BIOLOGY 35(11) 1641-1650 2012年11月 査読有り
• Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis

  Ryosuke Nakai, Takashi Abe, Tomoya Baba, Satoshi Imura, Hiroshi Kagoshima, Hiroshi Kanda, Yuji Kohara, Akiko Koi, Hironori Niki, Katsuhiko Yanagihara …

  POLAR BIOLOGY 35(10) 1495-1504 2012年10月 査読有り
• Microflorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses

  Ryosuke Nakai, Takashi Abe, Tomoya Baba, Satoshi Imura, Hiroshi Kagoshima, Hiroshi Kanda, Atsuko Kanekiyo, Yuji Kohara, Akiko Koi, Keiko Nakamura …

  POLAR BIOLOGY 35(3) 425-433 2012年3月 査読有り
• Evaluation of the Prediction of Gene Knockout Effects by Minimal Pathway Enumeration

  Soh T, Inoue K, Baba T, Takada T, Shiroishi T

  International Journal on Advances in Life Sciences 4 154-165 2012年 査読有り
• 南極大陸のコケ坊主生物圏

  馬場 知哉

  日本ゲノム微生物学会ニュースレター 6 1-1 2012年 招待有り
• Direct PCR amplification of the 16S rRNA gene from single microbial cells isolated from an Antarctic iceberg using laser microdissection microscopy

  Katsuhiko Yanagihara, Hironori Niki, Tomoya Baba

  POLAR SCIENCE 5(3) 375-382 2011年9月 査読有り
• ENVIRONMENTAL DEPENDENCY OF GENE KNOCKOUTS ON PHENOTYPE MICROARRAY ANALYSIS IN ESCHERICHIA COLI

  Yukako Tohsato, Tomoya Baba, Yusaku Mazaki, Masahiro Ito, Barry L. Wanner, Hirotada Mori

  JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 8 83-99 2010年12月 査読有り