有田 正規

論文

• In Silico Identification of MYB Transcription Factors Involved in Mangosteen Anthocyanin and Xanthone Production

  Ching-Ching Wee, Masanori Arita, Intan Azlinda Ramlee, Nor Azlan Nor Muhammad, Vijay Kumar Subbiah, Hoe-Han Goh

  TROPICAL PLANT BIOLOGY 19(1) 2026年1月20日
• Genomic determinants of antibiotic resistance for Helicobacter pylori treatment: a retrospective phenotypic and genotypic observational study

  Francisco José Martínez-Martínez, Álvaro Chiner-Oms, Victoria Furió, Francisco José Martínez-Martínez, Victoria Furió, Iñaki Comas, Álvaro Chiner-Oms, Yoshio Yamaoka, John P Dekker, Francis Megraud …

  The Lancet Microbe 101217-101217 2025年12月 査読有り
• DDBJ update in 2025: system integration for global data-sharing including pathogen surveillance.

  Takeshi Ara, Yuichi Kodama, Takatomo Fujisawa, Takehide Kosuge, Kyungbum Lee, Jun Mashima, Osamu Ogasawara, Yasuhiro Tanizawa, Tomoya Tanjo, Yasukazu Nakamura …

  Nucleic acids research 2025年11月24日
• Data Sovereignty and Open Sharing: Reconceiving Benefit-Sharing and Governance of Digital Sequence Information

  Masanori Arita

  Data Science Journal 2025年2月21日
• Dissemination of local sub-variants of SARS-CoV-2 detected by detailed mutation analysis in wastewater-based epidemiology.

  Ryo Honda, Takashi Abe, Tomoya Baba, Yui Araki, Tomohiro Kuroita, Ryo Iwamoto, Mayo Ito, Nami Okamura, Marie Kenza Yousri, Takashi Tamura …

  PloS one 20(5) e0317076 2025年
• Disentangling the gut microbiota of Aldabra giant tortoises of different ages and environments.

  Douaa Zakaria, Camillo Sandri, Monica Modesto, Caterina Spiezio, Donatella Scarafile, Allen Cedras, Luigimaria Borruso, Paolo Manghi, Paolo Trevisi, Nicola Segata …

  PeerJ 13 e19566 2025年
• Retention order prediction of peptides containing non-proteinogenic amino acids.

  Shohei Nakamukai, Eisuke Hayakawa, Tetsuya Mori, Yuji Ise, Masami Yokota Hirai, Masanori Arita

  Bioinformatics advances 5(1) vbaf246 2025年
• Examination and implementation of external repository linkage functions in data catalogs

  Makoto ASAOKA, Masaharu HAYASHI, Masanori ARITA, Takatomo FUJISAWA, Toshiaki KATAYAMA, Tomoya TANJO, Kazutsuna YAMAJI

  Joho Chishiki Gakkaishi 34(4) 349-352 2024年11月30日
• DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data.

  Yuichi Kodama, Takeshi Ara, Asami Fukuda, Toshiaki Tokimatsu, Jun Mashima, Takehide Kosuge, Yasuhiro Tanizawa, Tomoya Tanjo, Osamu Ogasawara, Takatomo Fujisawa …

  Nucleic acids research 53(D1) D45-D48 2024年10月9日
• The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

  Dominik Kopczynski, Christer S. Ejsing, Jeffrey G. McDonald, Takeshi Bamba, Erin S. Baker, Justine Bertrand-Michel, Britta Brügger, Cristina Coman, Shane R. Ellis, Timothy J. Garrett …

  Journal of Lipid Research 65(9) 100621-100621 2024年9月
• Evolutionary paths toward multi-level convergence of lactic acid bacteria in fructose-rich environments

  Naoki Konno, Shintaro Maeno, Yasuhiro Tanizawa, Masanori Arita, Akihito Endo, Wataru Iwasaki

  Communications Biology 7(1) 2024年7月24日
• InChI isotopologue and isotopomer specifications.

  Hunter N B Moseley, Philippe Rocca-Serra, Reza M Salek, Masanori Arita, Emma L Schymanski

  Journal of cheminformatics 16(1) 54-54 2024年5月14日
• Publishing in the Open Access and Open Science era.

  Masanori Arita, Bernd Pulverer, Tadashi Uemura, Chisako Sakuma, Shigeo Hayashi

  Genes to cells : devoted to molecular & cellular mechanisms 29(4) 275-281 2024年4月
• Isolation and Identification of Lactic Acid Bacteria from Environmental Samples.

  Akihito Endo, Yasuhiro Tanizawa, Shintaro Maeno, Masanori Arita

  Methods in molecular biology (Clifton, N.J.) 2851 3-14 2024年
• The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes

  Kaisa Thorell, Zilia Y. Muñoz-Ramírez, Difei Wang, Santiago Sandoval-Motta, Rajiv Boscolo Agostini, Silvia Ghirotto, Roberto C. Torres, Judith Romero-Gallo, Uma Krishna, Richard M. Peek …

  Nature Communications 14(1) 2023年12月11日
• Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.

  Ruth E Timme, Ilene Karsch-Mizrachi, Zahra Waheed, Masanori Arita, Duncan MacCannell, Finlay Maguire, Robert Petit Iii, Andrew J Page, Catarina Inês Mendes, Muhammad Ibtisam Nasar …

  Microbial genomics 9(12) 2023年12月
• SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan.

  So Nakagawa, Toshiaki Katayama, Lihua Jin, Jiaqi Wu, Kirill Kryukov, Rise Oyachi, Junko S Takeuchi, Takatomo Fujisawa, Satomi Asano, Momoka Komatsu …

  Genes & genetic systems 98(5) 221-237 2023年11月21日
• DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.

  Takeshi Ara, Yuichi Kodama, Toshiaki Tokimatsu, Asami Fukuda, Takehide Kosuge, Jun Mashima, Yasuhiro Tanizawa, Tomoya Tanjo, Osamu Ogasawara, Takatomo Fujisawa …

  Nucleic acids research 2023年11月16日
• Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum

  Shizuka Koshimizu, Sachiko Masuda, Arisa Shibata, Takayoshi Ishii, Ken Shirasu, Atsushi Hoshino, Masanori Arita

  DNA Research 30(5) 2023年9月11日
• Towards a Rosetta stone for metabolomics: recommendations to overcome inconsistent metabolite nomenclature.

  Ville Koistinen, Olli Kärkkäinen, Pekka Keski-Rahkonen, Hiroshi Tsugawa, Augustin Scalbert, Masanori Arita, David Wishart, Kati Hanhineva

  Nature metabolism 5(3) 351-354 2023年3月