Search NONCODE--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Search NONCODE

Keyword Search



Example:
  • Human : e.g. NONHSAG0000148.2
  • A.Thaliana : e.g. NONATHG000006.1
    • This page allows you to search All, uniq-ncRNA and reference in NONCODE by keywords. You can enter multiple words separated by whitespace into the box and these will be implicitly joined with a logical AND. Here is the query tips.

    If you have trouble with searching, you can check the following tips.

    1. Check spelling of your keyword.
    2. Carefully select what you want to search: NONCODE ID, RefSeq ID, Ensembl ID, NONCODE v3 ID, or name.
    3. Remember, multiple keywords will be implicitly joined with a logical AND.
    4. In NONCODE you can do further search in your search result, so you may begin your search with fewer keywords.
    5. If you gained no results or too few results, you may search the substring of the keywords.


    1. Search NONCODE, you can use NONCODE id as keywords.
    2. Search Refseq, you can use refseq id as keywords.
    3. Search Ensembl, you can use ensembl id as keywords. [Note: Search Ensembl supports only transcripts. ]
    4. Search Name, you can use name as keywords.
    5. Search NONCODEv3, you can use NONCODEv3 id as keywords.


    Subset Search

    Species: Source: Exon Number: Length: CNCI score:
    To satisfying researchers quality demand, NONCODEv5 provides a subset searching interface. You can choose the following conditions to get the high quality subset.


    1. source of the data, for instance, from literature, or from RefSeq or Ensembl or GENCODE or lncRNAdb, or from the third-generation sequencing technology, etc.
    2. exon number of a transcript. The more exons, maybe the higher quality of the transcripts.
    3. the length of the transcript. The longer, maybe the higher quality of the transcripts.
    4. the predicted score. The smaller of the score, the higher quality of the transcripts. The predicted tools used is CNCI, introduced in this paper. Sun, L., Luo, H., Bu, D., Zhao, G., Yu, K., Zhang, C., Liu, Y., Chen, R. and Zhao, Y. (2013) Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. Nucleic Acids Res, 41, e166.




    NONCODE

    Introduce of NONCODE
    Browse NONCODE
    Search a gene/transcript
    Statistics
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    Genome
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    Bio-tools

    ncFANs
    CNCI
    lnc-GFP
    lncRNA Analysis pipeline

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