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An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

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Seqeunces of NONOCDEv6

Species Download Address MD5
Human NONCODEv6_human.fa.gz 71eb68530792def450bc436b43e97513
Mouse NONCODEv6_mouse.fa.gz 9c2e5402dceed16d02f74270c222e3f7
Cow NONCODEv6_cow.fa.gz 4e1c36b1774b40dc8c49fafe8e7fa69f
Rat NONCODEv6_rat.fa.gz 3e5eb5bddc88d2473383343ee8e2b9fb
Chicken NONCODEv6_chicken.fa.gz d771fa576e6dd386e24c585192bb737c
C.Elegans NONCODEv6_celegans.fa.gz 73c8c2c671b61c2806147cead6965fc6
D.Melanogaster NONCODEv6_fruitfly.fa.gz 90711cd04f73ec8791b39e623ab1360d
Zebrafish NONCODEv6_zebrafish.fa.gz 7c915acbb26c83d89bbf54c8345bbdd5
Yeast NONCODEv6_yeast.fa.gz 3f068ec1671cd6865d21b93df5ac4835
Chimp NONCODEv6_chimp.fa.gz 349ae801226a52f015ad5230b0373800
Gorilla NONCODEv6_gorilla.fa.gz 81c6bb93ac866554f0c9a27407c94e2a
Orangutan NONCODEv6_orangutan.fa.gz 58dff623e05c0b1364b226dabc34fce9
Rhesus NONCODEv6_rhesus.fa.gz fa110411a7e83777b0703586e691da7f
Opossum NONCODEv6_opossum.fa.gz 11cfab7b60185e48876013e17e5c9a4b
Platypus NONCODEv6_platypus.fa.gz 15aec74194aa0e2f94d86b49ce0d3ae8
Pig NONCODEv6_pig.fa.gz 09694f22b454a1598f167f9f92c1ea7b
A. thaliana NONCODEv6_ATH.fa.gz 2f60b2477d7dc1c2a7297ba95c503498
B. napus NONCODEv6_BNA.fa.gz c33effdf4835e3d7a9ea2b65feda741b
B. rapa NONCODEv6_BRA.fa.gz f94af0c5060fea5d1def323bef76beb5
Quinoa NONCODEv6_CQU.fa.gz 55a414bd0046d01a94c679a188182a68
C. reinhardtii NONCODEv6_CRE.fa.gz 86bee847aeebc3228769809e28c03acf
Cucumber NONCODEv6_CSA.fa.gz 38b771e3935adda2db635d8f34227262
Soybean NONCODEv6_GMA.fa.gz ec75c1b40c40fe520c86361a3f5322b3
G. raimondii NONCODEv6_GRA.fa.gz 6681f8d8a9077673d3b4aecdaccd57d5
Apple NONCODEv6_MAL.fa.gz c03eb096cc55fb08c63d5a234ecbdae1
Cassava NONCODEv6_MES.fa.gz 25639acfea930838106264ebde2eed98
M. truncatula NONCODEv6_MTR.fa.gz 73d7f0d98607e32a04cd73d0c34a75b8
Banana NONCODEv6_MAC.fa.gz ecb28e75ca2d663a5eb140bfd47a98a4
O. rufipogon NONCODEv6_ORU.fa.gz 57939cd894e4de1d68aa85ad38aa449d
O. sativa NONCODEv6_OSA.fa.gz dc1dc78025be549b7d05d926335d8be3
P. patens NONCODEv6_PPA.fa.gz e0597ada0b3b278a2d5b72a89469da59
P. trichocarpa NONCODEv6_POP.fa.gz fa6923e167ca129b7dd393b129792aa1
Tomato NONCODEv6_SLY.fa.gz e123ff3b1c0af350cac4442b17460b44
Potato NONCODEv6_STU.fa.gz bf1ed9a86b755653fc7bcd4247203052
Cacao NONCODEv6_TCA.fa.gz 4bc428a653fd9e26e82104791bb6628a
Trefoil NONCODEv6_TPR.fa.gz 8db31c041e10e4d31fc40ce28c28f0a0
Wheat NONCODEv6_TAE.fa.gz 9fe60b752bd46989f4f2d8f4ba743a63
Grape NONCODEv6_VVI.fa.gz 388b9f6ac8af5d0bcbcbca97187e7ef2
Maize NONCODEv6_ZMA.fa.gz 234c8b3940319a42c821e734f6e98211

LncRNA and LncRNA Genes(Bed Format) of NONCODEv6

Species Download Address MD5
Human NONCODEv6_hg38.lncAndGene.bed.gz 99de4e0d68a2dc79fad62bfb6c7e6678
Mouse NONCODEv6_mm10.lncAndGene.bed.gz 7764c60f557c2510093453025ce8b2d1
Cow NONCODEv5_bosTau6.lncAndGene.bed.gz cd9302df59d2737c5ef49f7234519e6f
Rat NONCODEv5_rn6.lncAndGene.bed.gz 0cd94e0c2dd2f6f7baaf7fb81dba4eae
Chicken NONCODEv5_galGal4.lncAndGene.bed.gz d01593a6bf426d8679d8a7187eedefa5
C.Elegans NONCODEv5_ce10.lncAndGene.bed.gz adbec0a3036c0610bbaf08112769d6f2
D.Melanogaster NONCODEv5_dm6.lncAndGene.bed.gz 5f84a8b049b6654aeecbbc9b793edde6
Zebrafish NONCODEv5_danRer10.lncAndGene.bed.gz 30f9c09a378a4e6b7ed72399f0f8a362
A.Thaliana NONCODEv5_tair10.lncAndGene.bed.gz 6a44671d7d404e917533c6aa956a041b
Yeast NONCODEv5_sacCer3.lncAndGene.bed.gz 9e15e9d9c8b1849f6061c2e4f32a866e
Chimp NONCODEv5_panTro4.lncAndGene.bed.gz 4cc5c3b41f7c5995b77164a7d8de415e
Gorilla NONCODEv5_gorGor3.lncAndGene.bed.gz 107761da32e0e3ce81a84cc0703f7128
Orangutan NONCODEv5_ponAbe2.lncAndGene.bed.gz 91127932a67d15ed478e5d291e86c993
Rhesus NONCODEv5_rheMac3.lncAndGene.bed.gz 765ac3d8f3826ff24cafda047c495aa0
Opossum NONCODEv5_monDom5.lncAndGene.bed.gz a51ed9a7ba079700ed5840677eb1a370
Platypus NONCODEv5_ornAna1.lncAndGene.bed.gz e2dc4a20fe0f2a828e647aad764f640c
Pig NONCODEv5_susScr3.lncAndGene.bed.gz 2ea2e0d253818d64af60e5ebd75287de
A. thaliana ATH.NONCODEv6.lnc.bed.gz 1d217181e4d23144420730a797356a49
B. napus BNA.NONCODEv6.lnc.bed.gz 63848a96f5bf08332ad6d3fb38ec18a2
B. rapa BRA.NONCODEv6.lnc.bed.gz 7f644c3870c77bffe66f05e71c0a5a34
Quinoa CQU.NONCODEv6.lnc.bed.gz bbccf2ea9e9c45f9039dc36d3e595782
C. reinhardtii CRE.NONCODEv6.lnc.bed.gz fb3524d66af24d452390fcdcb2d117fa
Cucumber CSA.NONCODEv6.lnc.bed.gz 4b17c7a0deec1dba79f2c346aed59405
Soybean GMA.NONCODEv6.lnc.bed.gz e0b88191aaeeac099fa4f0ff32daecbb
G. raimondii GRA.NONCODEv6.lnc.bed.gz dcc14ab367dfcd891f72c3e8cb06a780
Apple MAL.NONCODEv6.lnc.bed.gz 12f8fed495d5bb4b62cffa259c47b58c
Cassava MES.NONCODEv6.lnc.bed.gz 2d5a09f54d5f005ca9d2e35e1540d2b2
M. truncatula MTR.NONCODEv6.lnc.bed.gz c81a94924e83fb5398460a662ea66e23
Banana MAC.NONCODEv6.lnc.bed.gz a7f679c86a063d797c5f092a86177013
O. rufipogon ORU.NONCODEv6.lnc.bed.gz 728a39d2a484fa775e5c41dcfd233f45
O. sativa OSA.NONCODEv6.lnc.bed.gz 646d5d37756da379c0452d23a50b0ab5
P. patens PPA.NONCODEv6.lnc.bed.gz 41656c1a7a814f2d5baba11533a1f17a
P. trichocarpa POP.NONCODEv6.lnc.bed.gz 5059e2a224380fc4c604a37c08424a9a
Tomato SLY.NONCODEv6.lnc.bed.gz 31be6a7da28c00b7cb8d98e770892c5c
Potato STU.NONCODEv6.lnc.bed.gz 3dd8b0a597a43b034dd0dd7709baa85e
Cacao TCA.NONCODEv6.lnc.bed.gz b965f2e67f82715c362a15fac22c66bb
Trefoil TPR.NONCODEv6.lnc.bed.gz 0e5159e46351a650e9dfcafb5c642d03
Wheat TAE.NONCODEv6.lnc.bed.gz 31776e7e2f22f0b21b620dcd241b7b49
Grape VVI.NONCODEv6.lnc.bed.gz 7c3ca855171ce4c51c8bb09f58c3055d
Maize ZMA.NONCODEv6.lnc.bed.gz 1f6e1b14a46355e2bbc2d2fad7a33082

Other tables for NONCODE

Data Download Address MD5
Novel LncRNA in human T cells Novel_lncRNA_in_T_cells.gtf.gz fa06f1137328fff152a49c0352f34b7c
gtf file of human lncRNA NONCODEv6_human_hg38_lncRNA.gtf.gz b77c248e6d0271b69bfb8163617a6302

This following links provide all the ncRNA data (in fasta format) in earlier versions of NONCODE.

ncRNA in NONCODE v5.0
zip file (windows version): ncrna_NONCODE[v5.0].fasta.zip ab80607f5ca69240525328a9105651cd
zip file (linux version): ncrna_NONCODE[v5.0].fasta.tar.gz 5a56f86094491fbb49e7c5db415c0893
ncRNA in NONCODE 2016
zip file (windows version): ncrna_NONCODE2016.fasta.zip 3b7e310122e76758de42482dbc7969a5
zip file (linux version): ncrna_NONCODE2016.fasta.tar.gz cbd1d1ed4b6116f592760e4ecfec7a36
ncRNA in NONCODE v4.0
zip file (windows version): ncrna_NONCODE[v4.0].fasta.zip ecf9c3e12bb6ed856ba0477a13b68463
zip file (linux version): ncrna_NONCODE[v4.0].fasta.tar.gz 46c8a992c9a7d1cee3473a89f475f20a
ncRNA in NONCODE v3.0
zip file (windows version): ncrna_NONCODE[v3.0].fasta.zip 6853946c150a38a3b62a7f81bc75f42e
zip file (linux version): ncrna_NONCODE[v3.0].fasta.tar.gz 4c2da91a262087bb0ef34e40fae2d430
ncRNA in NONCODE v2.0
zip file (windows version): ncrna_NONCODE[v2.0].fasta.zip aba3aa00aa3c4b3eb39b105717e7cc69
zip file (linux version): ncrna_NONCODE[v2.0].fasta.tar.gz 87129711c942a012f7dc87831049ee14
ncRNA in NONCODE v1.0
zip file (windows version): ncrna_NONCODE[v1.0].fasta.zip e1c5fb76ddf0b02835041a23169cc263
zip file (linux version): ncrna_NONCODE[v1.0].fasta.tar.gz 8002f0b1cd16c12fc5127e484057bde1


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