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Data From External Resources Integrated Into RCSB PDB

RCSB PDB integrates external data, which remains subject to the original terms and licenses set by the providers. Users must review and comply with these terms, especially for commercial use. RCSB PDB does not impose additional licensing requirements and advises users to refer to the official documentation of each external resource for details.

AlphaFold DB Computed Structure Models by AlphaFold2
ATC Anatomical Therapeutic Chemical (ATC) Classification System from World Health Organization
BindingDB Binding affinities
BMRB BMRB-to-PDB mappings
CARD Comprehensive Antibiotic Resistance Database
CATH Protein structure classification- Class, Architecture, Topology/fold, and Homologous superfamily
ChEBI Chemical entities of biological interest
ChEMBL Manually curated database of bioactive molecules with drug-like properties
CSD Cambridge Structural Database: Validated and curated small-molecule organic and metal-organic crystal structures from the Cambridge Crystallographic Data Centre
DrugBank Drug and drug target data. DrugBank data are sourced from datasets licensed under a Creative Common's Attribution-NonCommercial 4.0 International License
ECOD Evolutionary Classification of Protein Domains
EMDB 3DEM density maps and associated metadata
ExplorEnz IUBMB Enzyme nomenclature and classification
Gencode Human and Mouse Gene annotations
Gene Ontology Organization of biological data related to molecular functions, cellular components, and biological processes
Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource) Tissue-specific gene expression data
GlyCosmos A web portal aiming to integrate the glycosciences with the life sciences about genes, proteins, lipids, pathways and diseases.
GlyGen A data integration and dissemination resource for carbohydrate and glycoconjugate related data which provides computational and informatics resources and tools for glycosciences research.
GlyTouCan An international glycan structure repository with unique accession code for each unique glycan.
Human Gene Nomenclature Committee Human gene name nomenclature and genomic information
IMGT The international ImMunoGeneTics information system
Immune Epitope Database Antibody and T cell epitopes
International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource) Mouse gene phenotype data
InterPro Classification of protein families
M-CSA Mechanism and Catalytic Site Atlas
MemProtMD Annotation of transmembrane protein structures
ModelArchive Computed Structure Models (e.g., by RoseTTAFold)
Mondo Disease Ontology The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world
mpstruc Classification of transmembrane protein structures
NAKB Experimentally-determined nucleic acids and complex assemblies
NCBI Gene Gene info, reference sequences, et al.
NCBI Taxonomy Organism Classification
OPM Classification of transmembrane protein structures and membrane segments
PDBflex Protein structure flexibility
PDBTM (UniTmp) Annotation of transmembrane protein structures and membrane segments
Pfam Protein families
Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource) Drug targets and diseases based on ontologies available from the Drug Target Ontology, Mondo Disease Ontology, Disease Ontology, PANTHER, and GO
ProteinDiffraction.org Diffraction images
PubChem Chemical information
PubMed Citation information
PubMedCentral Open access literature
RESID Protein modifications
SAbDab The Structural Antibody Database
SBGrid Structural Biology Data Grid / diffraction images
SCOP Structural Classification of Proteins
SCOPe Structural Classification of Proteins — extended
SIFTS Structure Integration with Function, Taxonomy and Sequence
Thera-SAbDab Therapeutic Structural Antibody Database
UniProt Protein sequences and annotations

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Last updated: 3/24/2025

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