RCSB PDB Help

Structure Prediction

■しかく Software

■しかく Web servers

AlphaFold2 Open source code for AlphaFold

RoseTTAFold A software tool that uses deep learning to quickly and accurately predict protein structures based on limited information.

OpenFold Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

OmegaFold OmegaFold Release Code

HelixFold An Efficient and Improved Implementation of AlphaFold 2 using PaddlePaddle

HelixFold-single A single sequence language-model-based prediction network

ESMFold Evolutionary Scale Modeling (esm): Pretrained language models for proteins

ColabFold AlphaFold2 using MMseqs2

I-TASSER (Iterative Threading ASSEmbly Refinement) is a hierarchical approach to protein structure prediction and structure-based function annotation

COSMIC2 Online resource for freely-available structure prediction using AlphaFold2, ColabFold, and ESMFold at the San Diego Supercomputer Center.

AlphaFold Protein Structure Database AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence

ModelArchive Repository for theoretical models of macromolecular structures

ModBase A database of comparative protein structure models

SWISS-MODEL Repository A database of annotated protein structure homology models

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Last updated: 9/30/2024