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VMD (current) Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• _py3_inittab
• abuf
• ANARIRender
• anr_cylinder_array_color
• anr_directional_light
• anr_material
• anr_positional_light
• anr_sphere_array_color
• anr_trimesh_v3f_n3f_c3f
• ArithmeticPathCV::ArithmeticPathBase< element_type, scalar_type, path_type >
• atom
• AtomColor
• AtomData
• AtomEntry
• AtomGrid
• AtomGridCell
• atomic_int_struct
• AtomList
• atomparser_node
• atomparser_string
• AtomPosType
• AtomRep
• AtomRepDataInfo
• AtomRepParamStruct
• AtomSel
  • AtomSelThr
• atomsel_ctxt
• atomsel_iterobject
• axis
• barrier_struct
• BaseMolecule
  • DrawMolecule
    • Molecule
• basis_atom_t
• Best
• BinOfAtoms
• bond
• bondlist
• bondsearchthrparms
• busbwthrparms
• Buttons
  • CaveButtons
  • FreeVRButtons
  • MobileButtons
  • PhoneButtons
  • SpaceballButtons
  • VRJugglerButtons
  • VRPNButtons
• clusterparms_t
• ColorScale
• ColorscaleImage
• ColorscaleLumaChart
• ColorScaleTypeInfo
• colvarbias_meta::hill
• colvardeps
  • colvar
  • colvar::cvc
    • colvar::alch_Flambda
    • colvar::alch_lambda
    • colvar::alpha_angles
    • colvar::angle
    • colvar::cartesian
    • colvar::componentDisabled
      • colvar::aspathCV
      • colvar::azpathCV
      • colvar::CartesianBasedPath
      • colvar::CVBasedPath
      • colvar::gspath
      • colvar::gspathCV
      • colvar::gzpath
      • colvar::gzpathCV
      • colvar::linearCombination
      • colvar::neuralNetwork
    • colvar::coordnum
    • colvar::dihedPC
    • colvar::dihedral
    • colvar::dipole_angle
    • colvar::dipole_magnitude
    • colvar::distance
      • colvar::distance_dir
      • colvar::distance_vec
      • colvar::groupcoordnum
    • colvar::distance_inv
    • colvar::distance_pairs
    • colvar::distance_z
      • colvar::distance_xy
    • colvar::eigenvector
    • colvar::gyration
      • colvar::inertia
        • colvar::inertia_z
    • colvar::h_bond
    • colvar::map_total
    • colvar::orientation
      • colvar::euler_phi
      • colvar::euler_psi
      • colvar::euler_theta
      • colvar::orientation_angle
      • colvar::orientation_proj
      • colvar::spin_angle
      • colvar::tilt
    • colvar::polar_phi
    • colvar::polar_theta
    • colvar::rmsd
    • colvar::selfcoordnum
  • colvarbias
    • colvarbias_abf
    • colvarbias_alb
    • colvarbias_histogram
      • colvarbias_reweightaMD
    • colvarbias_meta
    • colvarbias_restraint
      • colvarbias_restraint_centers
        • colvarbias_restraint_centers_moving
          • colvarbias_restraint_harmonic
          • colvarbias_restraint_linear
      • colvarbias_restraint_k
        • colvarbias_restraint_k_moving
          • colvarbias_restraint_harmonic
          • colvarbias_restraint_harmonic_walls
          • colvarbias_restraint_linear
    • colvarbias_restraint_histogram
    • colvarbias_ti
      • colvarbias_meta
      • colvarbias_restraint
  • colvarbias_restraint_moving
    • colvarbias_restraint_centers_moving
    • colvarbias_restraint_k_moving
  • atom_group
• colvardeps::feature
• colvardeps::feature_state
• colvarmodule
• colvarmodule::matrix2d< T >
• colvarmodule::matrix2d< T >::row
• colvarmodule::quaternion
• colvarmodule::rmatrix
• colvarmodule::rotation
• colvarmodule::rvector
• colvarmodule::vector1d< T >
• colvarparams
  • colvarparse
    • colvar
    • colvar::cvc
    • colvar_grid< T >
    • colvar_grid< cvm::real >
      • colvar_grid_gradient
      • colvar_grid_scalar
        • integrate_potential
    • colvar_grid< size_t >
      • colvar_grid_count
    • colvarbias
    • colvarbias_restraint_moving
    • atom_group
• colvarparse::read_block
• colvarproxy_atom_groups
  • colvarproxy
    • colvarproxy_vmd
• colvarproxy_atoms
  • colvarproxy
• colvarproxy_io
  • colvarproxy
• colvarproxy_replicas
  • colvarproxy
• colvarproxy_script
  • colvarproxy
• colvarproxy_smp
  • colvarproxy
• colvarproxy_system
  • colvarproxy
• colvarproxy_tcl
  • colvarproxy
• colvarproxy_volmaps
  • colvarproxy
• colvarscript
• colvarvalue
• Combinations
• Command
  • CmdAddAtomSelMacro
  • CmdAnimDelete
  • CmdAnimDir
  • CmdAnimDup
  • CmdAnimJump
  • CmdAnimNewFrame
  • CmdAnimNewNumFrames
  • CmdAnimSkip
  • CmdAnimSpeed
  • CmdAnimStyle
  • CmdAnimWriteFile
  • CmdColorChange
  • CmdColorItem
  • CmdColorName
  • CmdColorScaleColors
  • CmdColorScaleMethod
  • CmdColorScaleSettings
  • CmdDelAtomSelMacro
  • CmdDisplayAAOn
  • CmdDisplayAOAmbient
  • CmdDisplayAODirect
  • CmdDisplayAOOn
  • CmdDisplayAxes
  • CmdDisplayBackgroundGradientOn
  • CmdDisplayCacheMode
  • CmdDisplayClip
    • CmdDisplayClipFar
    • CmdDisplayClipFarRel
    • CmdDisplayClipNear
    • CmdDisplayClipNearRel
  • CmdDisplayCueDensity
  • CmdDisplayCueEnd
  • CmdDisplayCueMode
  • CmdDisplayCueStart
  • CmdDisplayCullingOn
  • CmdDisplayDepthcueOn
  • CmdDisplayDoFFNumber
  • CmdDisplayDoFFocalDist
  • CmdDisplayDoFOn
  • CmdDisplayEyesep
  • CmdDisplayFocallen
  • CmdDisplayFPSOn
  • CmdDisplayLightHL
  • CmdDisplayLightMove
  • CmdDisplayLightOn
  • CmdDisplayLightRot
  • CmdDisplayProj
  • CmdDisplayRenderMode
  • CmdDisplayScreenDistance
  • CmdDisplayScreenHeight
  • CmdDisplayShadowOn
  • CmdDisplayStageLocation
  • CmdDisplayStagePanels
  • CmdDisplayStageSize
  • CmdDisplayStereo
  • CmdDisplayStereoSwap
  • CmdIMDConnect
  • CmdIMDCopyUnitCell
  • CmdIMDRate
  • CmdIMDSim
  • CmdLabelAdd
  • CmdLabelAddspring
  • CmdLabelDelete
  • CmdLabelShow
  • CmdLabelTextFormat
  • CmdLabelTextOffset
  • CmdLabelTextSize
  • CmdLabelTextThickness
  • CmdMaterialAdd
  • CmdMaterialChange
  • CmdMaterialDefault
  • CmdMaterialDelete
  • CmdMaterialRename
  • CmdMenuExtensionAdd
  • CmdMenuExtensionRemove
  • CmdMenuShow
  • CmdMobileMode
  • CmdMolActive
  • CmdMolAddRep
  • CmdMolBondsRecalc
  • CmdMolCancel
  • CmdMolChangeRep
  • CmdMolChangeRepItem
  • CmdMolColor
  • CmdMolDelete
  • CmdMolDeleteRep
  • CmdMolDrawFrames
  • CmdMolFix
  • CmdMolLoad
  • CmdMolMaterial
  • CmdMolNew
  • CmdMolNumPeriodic
  • CmdMolOn
  • CmdMolReanalyze
  • CmdMolRename
  • CmdMolRep
  • CmdMolRepColorUpdate
  • CmdMolRepSelUpdate
  • CmdMolScaleMinmax
  • CmdMolSelect
  • CmdMolShowInstances
  • CmdMolShowPeriodic
  • CmdMolShowRep
  • CmdMolSmoothRep
  • CmdMolSSRecalc
  • CmdMolTop
  • CmdMolVolume
  • CmdMouseMode
  • CmdPluginUpdate
  • CmdRender
  • CmdRenderOption
  • CmdResetView
  • CmdRockOff
  • CmdRockOn
  • CmdRotate
  • CmdRotMat
  • CmdScale
  • CmdSpaceballMode
  • CmdToolAddDevice
  • CmdToolCallback
  • CmdToolChange
  • CmdToolCreate
  • CmdToolDelete
  • CmdToolDeleteDevice
  • CmdToolOffset
  • CmdToolRep
  • CmdToolScale
  • CmdToolScaleForce
  • CmdToolScaleSpring
  • CmdTranslate
  • InterpEvent
    • FrameEvent
    • GraphLabelEvent
    • HelpEvent
    • InitializeStructureEvent
    • LogfileEvent
    • MobileDeviceCommandEvent
    • MobileEvent
    • MobileStateChangedEvent
    • MoleculeEvent
    • MouseModeEvent
    • MousePositionEvent
    • PickAtomCallbackEvent
    • PickAtomEvent
    • PickGraphicsEvent
    • PickSelectionEvent
    • PickValueEvent
    • PythonEvalEvent
    • SpaceballEvent
    • TclEvalEvent
    • TimestepEvent
    • TrajectoryReadEvent
    • UserKeyEvent
  • PickEvent
• CommandQueue
• compile_data
• ComputeOccupancyMap_t
• CoorData
  • CoorPluginData
• ctxt
• CUDAAccel
• cudadevprops
• CUDAMarchingCubes
• CUDAQuickSurf
• DeltaCounter
• densitythrparms
• DepthSortObject
• DirectionalLight
• DirectionalLightList
• DispCmdBeginRepGeomGroup
• DispCmdColorIndex
• DispCmdComment
• DispCmdCone
• DispCmdCylinder
• DispCmdLatticeCubeArray
• DispCmdLine
• DispCmdLineArray
• DispCmdLineType
• DispCmdLineWidth
• DispCmdLitPointArray
• DispCmdPickPoint
• DispCmdPickPointArray
• DispCmdPoint
• DispCmdPointArray
• DispCmdPolyLineArray
• DispCmdSphere
• DispCmdSphereArray
• DispCmdSphereRes
• DispCmdSphereType
• DispCmdSquare
• DispCmdText
• DispCmdTriangle
• DispCmdTriMesh
• DispCmdTriStrips
• DispCmdVolSlice
• DispCmdVolumeTexture
• DispCmdWireMesh
• DisplayDevice
  • FileRenderer
    • ANARIDisplayDevice
    • ArtDisplayDevice
    • GelatoDisplayDevice
    • LibGelatoDisplayDevice
    • LibTachyonDisplayDevice
    • MayaDisplayDevice
    • OptiXDisplayDevice
    • OSPRay2DisplayDevice
    • OSPRayDisplayDevice
    • POV3DisplayDevice
    • PSDisplayDevice
    • R3dDisplayDevice
    • RadianceDisplayDevice
    • RayShadeDisplayDevice
    • RenderManDisplayDevice
    • SnapshotDisplayDevice
    • STLDisplayDevice
    • TachyonDisplayDevice
    • Vrml2DisplayDevice
    • VrmlDisplayDevice
    • WavefrontDisplayDevice
    • X3DDisplayDevice
      • X3DOMDisplayDevice
  • OpenGLRenderer
    • CaveDisplayDevice
    • FltkOpenGLDisplayDevice
    • FreeVRDisplayDevice
    • OpenGLDisplayDevice
    • OpenGLPbufferDisplayDevice
    • VRJugglerDisplayDevice
• DrawMoleculeMonitor
  • GeometryMonitor
• elementsummary
• enthrparms
• eventdataunion
• Feedback
  • VRPNFeedback
• FileRenderer::AdvancedLightState
• FileRenderer::LightState
• FileRenderList
• FileSpec
• FindWithinData
• flint_t
• Fragment
• FrameSelector
• GaussianBlur< IMAGE_T >
• GeometricPathCV::GeometricPathBase< element_type, scalar_type, path_type >
• GeomListStruct
• globmembwthrparms
• glsl_shader
• glwin_ext_fctns
• glwin_fbo_target
• glwin_warp_hmd
• glxdata
• gofrparms_t
• gpuqcprmsdthreadparms
• gpuseg_temp_storage
• GraphicsFltkRep
  • GraphicsFltkRepBonds
    • GraphicsFltkRepLicorice
    • GraphicsFltkRepRibbons
      • GraphicsFltkRepCartoon
    • GraphicsFltkRepTrace
    • GraphicsFltkRepTube
  • GraphicsFltkRepCPK
  • GraphicsFltkRepDynamicBonds
  • GraphicsFltkRepHBonds
  • GraphicsFltkRepLines
  • GraphicsFltkRepMSMS
  • GraphicsFltkRepNanoShaper
  • GraphicsFltkRepNewCartoon
  • GraphicsFltkRepNewRibbons
  • GraphicsFltkRepOrbital
  • GraphicsFltkRepPoints
  • GraphicsFltkRepQuickSurf
  • GraphicsFltkRepSolvent
  • GraphicsFltkRepSurf
  • GraphicsFltkRepVDW
    • GraphicsFltkRepBeads
    • GraphicsFltkRepDotted
  • GraphicsFltkRepVolumetric
    • GraphicsFltkRepFieldLines
    • GraphicsFltkRepIsosurface
    • GraphicsFltkRepVolumeSlice
• GraphicsFltkRepOrbital::minmax
• GraphicsFltkRepVolumetric::minmax
• GraphLayout
• GRIDCELL
• GridList
• GridResCounter
• GridSearchPair
• GridSearchPairlist
• group_t< IMAGE_T >
• hash_node_t
• hash_t
• hersheyhandle
• HMDMgr
• IdList
• IMDEnergies
• IMDheader
• IMDSim
  • IMDSimBlocking
  • IMDSimThread
• IndexList
• Inform
• InterpParams_t
• inthash_node_t
• inthash_t
• intstack
• IsoContour
• IsoSlider
• IsoSurface
• isosurface_cbdata
• JRegex
• JString
• latthrparms
• LINE
• linenoiseCompletions
• linenoiseState
• LinkageEdge
• LinkagePath
• M_VRJapp
• maddthrparms
• match_data
• Material
• MaterialList
• Matrix4
• mobilehandle
• MolAtom
• MolBrowser
• MolData
• MoleculeList
• MolFilePlugin
• Msmpot_t
• MsmpotCuda_t
• MSMSCoord
• MSMSFace
• MSMSInterface
• My_Fl_Positioner
• myBrowser
• myFl_Chart
• myglwindow
• UIestimator::n_matrix
• UIestimator::n_vector< T >
• NameList< T >
• NanoShaperCoord
• NanoShaperFace
• NanoShaperInterface
• netint
• nvencfctns
• NVENCMgr
• occthrparms_t
• oglhandle
• OpenGLCache
• OpenGLExtensions
• OpenGLShader
• OptiXRenderer
• Orbital
• orbital_cbdata
• orbthrparms
• ort_directional_light
• ort_material
• ort_positional_light
• OsgNavigator
• osp_cylinder_array_color
• osp_directional_light
• osp_material
• osp_positional_light
• osp_sphere_array_color
• osp_trimesh_v3f_n3f_c3f
• OSPRay2Renderer
• OSPRayRenderer
• ParseTree
• PBCControls
• PerRayData_radiance
• PerRayData_shadow
• Pickable
  • Displayable
    • Axes
    • DisplayColor
    • DisplayRocker
    • DrawForce
    • DrawMolecule
    • DrawMolItem
    • DrawTool
    • FPS
    • GeometryList
    • GeometryMol
      • GeometryAngle
      • GeometryAtom
      • GeometryBond
      • GeometryDihedral
      • GeometrySpring
    • MoleculeGraphics
    • Stage
    • VMDTitle
• PickList
• PickMode
  • PickModeAddBond
  • PickModeCenter
  • PickModeForce
    • PickModeForceAtom
    • PickModeForceFragment
    • PickModeForceResidue
  • PickModeMolLabel
    • PickModeAngles
    • PickModeAtoms
    • PickModeBonds
    • PickModeDihedrals
  • PickModeMove
    • PickModeMoveAtom
    • PickModeMoveFragment
    • PickModeMoveMolecule
    • PickModeMoveRep
    • PickModeMoveResidue
  • PickModeUser
• PickModeList
• plane
• PluginMgr
• PointDistance
• PointGroupDefinition
• PositionalLight
• PositionalLightList
• prim_t
• ptrstack
• PyAtomSelObject
• qcprmsdthreadparms
• QMData
• QMTimestep
• Quat
• QuickSurf
• quicksurf_cbdata
• RadiusCounter
• rdfthrparms
• real_pcre
• real_pcre_extra
• RepChoice
• RepChoiceSmall
• Residue
• ResizeArray< T >
• ResolutionCounter
• RibbonFrame
• sasathreadparms
• ScaleSpaceFilter< GROUP_T, IMAGE_T >
• Scene
  • CaveScene
  • FreeVRScene
  • VRJugglerScene
• Segmentation
• SelectionBuilder
• SensorConfig
• shell_t
• ShortSlider
• simenc_handle
• SmallRing
• SmallRingLinkages
• SortableArray< T >
• spaceballevent
• spaceballhandle
• SQUARECELL
• Stack< T >
• state_t< GROUP_T, IMAGE_T >
• StepCounter
• Surf
• symbol_data
• SymbolTable
• SymbolTableElement
• Symmetry
• TextInterp
  • PlainTextInterp
  • PythonTextInterp
  • TclTextInterp
• Timestep
• TRIANGLE
• UIestimator::UIestimator
• UIObject
  • Animation
  • IMDMgr
  • Mobile
  • Mouse
  • Spaceball
  • Tool
    • GrabTool
    • JoystickTool
    • PinchTool
    • PrintTool
    • RotateTool
    • SpringTool
    • TugTool
  • UIText
  • UIVR
  • VideoStream
  • VMDCollab
  • VMDMenu
    • VMDFltkMenu
      • ColorFltkMenu
      • DisplayFltkMenu
      • FileChooserFltkMenu
      • GeometryFltkMenu
      • GraphicsFltkMenu
      • MainFltkMenu
      • MaterialFltkMenu
      • RenderFltkMenu
      • SaveTrajectoryFltkMenu
      • ToolFltkMenu
    • VMDTkinterMenu
    • VMDTkMenu
  • Win32Joystick
• usage
• Vector3D
• vmd_cylinder
• vmd_cylinder_color
• vmd_opencl_orbital_handle
• vmd_ring_color
• vmd_sphere
• vmd_sphere_color
• vmd_tricolor
• vmd_trimesh_c4u_n3b_v3f
• vmd_trimesh_n3b_v3f
• vmd_trimesh_n3f_v3f
• vmd_trimesh_v3f
• VMDApp
• VMDClipPlane
• VMDDIR
• VMDDisplayList
• VMDDisplayList::VMDLinkIter
• VMDTempFile
• VMDTracker
  • CaveTracker
  • FreeVRTracker
  • MobileTracker
  • PhoneTracker
  • SpaceballTracker
  • VRJugglerTracker
  • VRPNTracker
• vmdwinjoystick
• VolMapCreate
  • VolMapCreateCoulombPotential
  • VolMapCreateCoulombPotentialMSM
  • VolMapCreateDensity
  • VolMapCreateDistance
  • VolMapCreateInterp
  • VolMapCreateMask
  • VolMapCreateOccupancy
• VolMapCreateILS
• VolumeTexture
• VolumetricData
• VRJugglerSharedData
• VRPNTrackerUserData
• VSMsgHeader_t
• Watershed< GROUP_T, IMAGE_T >
• watershed_gpu_state_t< GROUP_T, IMAGE_T >
• wavef_signa_t
• Wavefunction
• wkf_cpu_caps_struct
• wkf_run_barrier_struct
• wkf_shared_iterator_struct
• wkf_tasktile_struct
• wkf_threadlaunch_struct
• wkf_threadpool_struct
• wkf_threadpool_workerdata_struct
• wkf_tilestack_t
• wkf_timer
• wkfmsgtimer
• wrap_nvml_handle
• wrap_nvmlPciInfo_t
• xidevhandle
• xinputhandle
• XY
• XYZ
• yy_buffer_state
• YYSTYPE
• yytoktype

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Generated on Mon Nov 17 02:47:56 2025 for VMD (current) by doxygen1.2.14 written by Dimitri van Heesch, © 1997-2002