This is the development version of BiocFileCache; for the stable release version, see
BiocFileCache.
Manage Files Across Sessions
Bioconductor version: Development (3.23)
This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.
Author: Lori Shepherd [aut, cre], Martin Morgan [aut]
Maintainer: Lori Shepherd <lori.shepherd at roswellpark.org>
Citation (from within R, enter citation("BiocFileCache")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BiocFileCache")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocFileCache")
1. BiocFileCache Overview: Managing File Resources Across Sessions
HTML
R Script
Details
Version
3.1.0
In Bioconductor since
BioC 3.5 (R-3.4) (8.5 years)
License
Artistic-2.0
Depends
R (>= 3.4.0),
dbplyr (>= 1.0.0)
System Requirements
See More
Linking To
Enhances
Depends On Me
AnnotationHub,
easylift,
ExperimentHub,
RcwlPipelines,
JASPAR2022,
JASPAR2024,
scATAC.Explorer,
TMExplorer, csawBook, OSCA.basic, OSCA.intro, OSCA.workflows
Imports Me
AlphaMissenseR,
AMARETTO,
atSNP,
autonomics,
BayesSpace,
bedbaser,
BiocCheck,
BiocHail,
biomaRt,
brendaDb,
bugsigdbr,
BulkSignalR,
cbaf,
cBioPortalData,
CBNplot,
CellBench,
CTDquerier,
customCMPdb,
CytoPipeline,
DeconvoBuddies,
easyRNASeq,
enhancerHomologSearch,
EnMCB,
EnrichmentBrowser,
EpiTxDb,
fenr,
fgga,
GenomicScores,
GenomicSuperSignature,
ggkegg,
GSEABenchmarkeR,
gwascat,
iSEEindex,
MBQN,
MIRit,
MotifPeeker,
MsBackendMetaboLights,
ontoProc,
ORFik,
OSTA.data,
PhIPData,
PMScanR,
psichomics,
rBLAST,
recount3,
recountmethylation,
regutools,
ReUseData,
RiboDiPA,
rpx,
scviR,
sesame,
signeR,
spacexr,
SpatialExperiment,
SpatialOmicsOverlay,
SpliceWiz,
SurfR,
tenXplore,
TFutils,
tomoseqr,
tximeta,
UMI4Cats,
UniProt.ws,
waddR,
xenLite,
geneplast.data,
HPO.db,
MPO.db,
org.Mxanthus.db,
PANTHER.db,
BioPlex,
bugphyzz,
depmap,
DNAZooData,
fourDNData,
HiContactsData,
MetaScope,
MicrobiomeBenchmarkData,
NxtIRFdata,
orthosData,
SFEData,
SingleCellMultiModal,
spatialLIBD,
convertid
Suggests Me
anndataR,
AnnotationForge,
bambu,
Bioc.gff,
BiocSet,
ChIPpeakAnno,
CoGAPS,
CRISPRseek,
dominoSignal,
EpiCompare,
fastreeR,
GRaNIE,
HicAggR,
HiCDCPlus,
HiCExperiment,
iscream,
MethReg,
Nebulosa,
nipalsMCIA,
progeny,
qsvaR,
seqsetvis,
TCGAutils,
TREG,
visiumStitched,
XeniumIO,
zellkonverter,
emtdata,
HighlyReplicatedRNASeq,
MethylSeqData,
msigdb,
TENxBrainData,
TENxPBMCData,
chipseqDB,
fluentGenomics,
simpleSingleCell,
scCustomize
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Windows Binary (x86_64)
Source Repository
git clone https://git.bioconductor.org/packages/BiocFileCache
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/BiocFileCache