| Strain number | NIES-3808 | |||
|---|---|---|---|---|
| Phylum | Dinophyta | |||
| Class | Dinophyceae | |||
| Scientific name | Breviolum minutum T.C.LaJeunesse, J.E.Parkinson & J.D.Reimer | |||
| Synonym | Symbiodinium minutum LaJeunesse, J.E.Parkinson & J.D.Reimer; Zooxanthella minuta (LaJeunesse, J.E.Parkinson & J.D.Reimer) Guiry & R.A.Andersen 2018 | |||
| Former name | Formerly identified as Symbiodinium minutum, named based on LaJeunesse et al. 2018[2019 Aug] | |||
| Common name | Dinoflagellate ; Zooxanthellae | |||
| Locality (Date of collection) | Tennessee Reef (Depth -22m), Florida Keys, Florida, USA (2002年10月20日) | |||
| Latitude / Longitude | 24.74001666 / | |||
| Habitat (Isolation source) | Marine (Coral) | |||
| History | < Shoguchi, Eiichi < Coffroth, M. A. | |||
| Isolator (Date of isolation) | Coffroth, M. A. (2002年10月22日) | |||
| Identified by | Coffroth, M. A. | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2025 May] | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 20 C Light intensity: 3 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 30 D |
|||
| Gene information | Whole-genome ( BASF00000000 ) , Plastid minicircle sequences ( JX094304-JX094335 ) , CO1 ( LC002801 ) , CO3 ( LC002802 ) , BAC paired-end sequences ( GA393224-GA453876 ) , Fosmid paired-end sequences ( GA453877-GA605429 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Symbiotic (corals) ; Genome decoded strain (Shoguchi et al. 2013) ; Clade B | |||
| Other strain no. | Other strain no. : Mf1.05b.01 | |||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
|
Related strain information
(Large number of orders and same genus or species)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-4271 |
Breviolum sp. | Dinoflagellate ; Zooxanthellae | Marine (Symbiodinium strain SSB01) | Symbiotic ; Mixotrophic ; Osmotrophic ; Mutant of Symbiodinium strain SSB01 (Uracil-required;( 5-FOA-resistant tolerant)(Ishii et al. 2018) |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-4076 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Cardiid clam (Tridacna crocea)) | Symbiotic (clam) ; Genome decoded strain (Shoguchi et al. 2018) ; Clade A |
| Reference |
|---|
|
Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S.
2015
The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans.
Genome Biol. Evol.,
7,
2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding Strain(s): 3808 PubMed: 26199191 DOI: 10.1093/gbe/evv137 Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422. Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles Strain(s): 3808 PubMed: 24881086 DOI: 10.1093/gbe/evu109 Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408. Strain(s): 3808 PubMed: 23850284 DOI: 10.1016/j.cub.2013年05月06日2 Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID). Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation Strain(s): 3808 PubMed: 31200330 DOI: 10.1016/j.aquatox.2019年05月01日7 Zhou, W., Zhang, X., Wan, A., Yang, L., Gan, Q., Yi, L., Summons, R. E., Volkman, J. K., Lu, Y. 2022 Widespread sterol methyltransferase participates in the biosynthesis of both C4α- and C4β-methyl sterols. J. Am. Chem. Soc., 144, 9023-9032. Strain(s): 3808 PubMed: 35561259 DOI: 10.1021/jacs.2c01401 Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID). Strain(s): 2907, 3808, 4076, 4077 PubMed: 38444256 DOI: 10.1111/1758-2229.13238 |
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