| Strain number | NIES-2758 | |||
|---|---|---|---|---|
| Phylum | Chlorophyta | |||
| Class | Chloropicophyceae | |||
| Scientific name | Chloroparvula japonica Lopes dos Santos, Noël & Eikrem | |||
| Synonym | ||||
| Former name | ||||
| Common name | ||||
| Locality (Date of collection) | North West Pacific Ocean Japan (2010年08月27日) | |||
| Latitude / Longitude | 33.3 / 138.0 | |||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < Kawachi, Masanobu < Noël, Mary-Hélène | |||
| Isolator (Date of isolation) | Noël, Mary-Hélène (2009-09-**) | |||
| Identified by | Kawachi, Masanobu | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
MNK
;
ESM
Temperature: 20 C Light intensity: 22-29 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | Mitochondrial genome ( MK086007 ) , Plastid genome ( MK085993 ) , 16S rRNA ( LN735350 ) , 18S rRNA ( KF422628 ) , ITS1-5.8S-ITS2-28S ( MF077482 ) | |||
| Cell size (min - max) | - 2 μm | |||
| Organization | ||||
| Characteristics | Genome decoded strain (Turmel et al. 2019) ; Authentic strain (Lopes dos Santos et al. 2017) ; Clade VIIB2 | |||
| Other strain no. |
Other collection strain no. : RCC2339; CCMP3360
Other strain no. : MH 340 |
|||
| Remarks | Cryopreserved | |||
| Movie | ||||
|
Related strain information
(Large number of orders and same genus or species)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3669 |
Chloroparvula pacifica | Marine (Seawater) | Genome decoded strain (Turmel et al. 2019) ; Authentic strain (Lopes dos Santos et al. 2017) ; Clade VIIB1 | |
|
NIES-3835 |
Chloroparvula sp. | Marine (Seawater) | Genome decoded strain (Turmel et al. 2019) ; Clade VIIB2 (Lopes dos Santos et al. 2017) | |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2695 |
Calcidiscus leptoporus | Coccolithophore | Marine (Seawater) | Planktonic |
|
NIES-2699 |
Gephyrocapsa oceanica | Coccolithophore | Marine (Seawater) | Planktonic |
|
NIES-3371 |
Triparma eleuthera | Marine (Seawater) | Planktonic ; Authentic strain (Ichinomiya et al. 2016) ; Non-siliceous flagellated stage[2018 May] | |
|
NIES-3668 |
Chloropicon roscoffensis | Marine (Seawater) | Clade VIIA4 (Lopes dos Santos et al. 2017) | |
|
NIES-2694 |
Calcidiscus leptoporus | Coccolithophore | Marine (Seawater) | Planktonic |
| Reference |
|---|
|
del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I.
2014
The others: our biased perspective of eukaryotic genomes.
Trends Ecol. Evol.,
29,
252-259.
Strain(s): 1000, 2582, 2584, 2587, 2590, 2670, 2673, 2691, 2693, 2694, 2695, 2696, 2697, 2699, 2700, 2707, 2751, 2753, 2755, 2756, 2758, 2761, 3369, 3370, 3371 PubMed: 24726347 DOI: 10.1016/j.tree.201403006 Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., Rodríguez, F., Noël, M.-H., Vaulot, D., Eikrem, W. 2017 Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Sci Rep, 7, 14019 (article ID). Strain(s): 2755, 2756, 2758, 3667, 3668, 3669, 3670, 3671, 3835, 3849 PubMed: 10.3775/jie.96.352 DOI: 10.1038/s41598-017-12412-5 Lopes dos Santos, A., Gourvil, P., Tragin, M., Noël, M.-H., Decelle, J., Romac, S., Vaulot, D. 2016 Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J., 11, 512-528. Strain(s): 2755, 2756, 2758, 3668, 3669, 3670, 3671, 3835, 3849 PubMed: 27779617 DOI: 10.1038/ismej.2016.120 Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292. Keywords: prasinophyte green algae; Picocystis salinarum; chloroplast genome; mitochondrial genome; phylogenomic analyses; AUA codon reassignment Strain(s): 2755, 2758, 3669, 3835, 3849 PubMed: 30937436 DOI: 10.1093/gbe/evz074 |
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