| Strain number | NIES-2100 | |||
|---|---|---|---|---|
| Phylum | Cyanophyta | |||
| Class | Cyanophyceae | |||
| Scientific name | Calothrix sp. | |||
| Synonym | ||||
| Former name | Calothrix gracilis Fritsch | |||
| Common name | Blue-green alga ; Cyanobacteria | |||
| Locality (Date of collection) | ||||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | ||||
| History | < IAM (2007) < Ishikawa, Masako | |||
| Isolator (Date of isolation) | Ishikawa, Masako | |||
| Identified by | Re-identified by DNA analysis at NIES | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2013 Feb] | |||
|
Culture condition (Preculture condition) |
Medium:
MDM (agar)
Temperature: 20 C Light intensity: 9-10 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 4 M |
|||
| Gene information | Whole-genome ( AP018179 ) , nearly complete genome ( AP018178 ) , 16S rRNA ( LC215282 ) | |||
| Cell size (min - max) | ||||
| Organization | Filamentous | |||
| Characteristics | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain | |||
| Other strain no. |
Other collection strain no. : IAM M-56
Other strain no. : Ishikawa 78. F243D |
|||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
|
Related strain information
(Large number of orders and same genus or species)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3974 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Hot spring (Stream Sediment) | Genome decoded strain |
|
NIES-4105 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Concrete fence) | Nitrogen fixation ; Attached ; Genome decoded strain |
|
NIES-2098 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain | |
|
NIES-2099 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) | |
|
NIES-2101 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial | Drought tolerance ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain (Zhu et al. 2017) |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-22 |
Calothrix brevissima | Blue-green alga ; Cyanobacteria | Freshwater (Soil) | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Chromatic adaptation |
|
NIES-267 |
Calothrix parasitica | Blue-green alga ; Cyanobacteria | Marine (Seaweed) | Endophyte in Nemalion (Rhodophyceae) ; Genome decoded strain |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2119 |
Phormidium ambiguum | Blue-green alga ; Cyanobacteria | Offensive odor ; geosmin production (Iwase et al. 2010) ; Hydrogen evolution ; Attached ; Genome decoded strain (Zhu et al. 2017) | |
|
NIES-4101 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Sediment) | Genome decoded strain |
|
NIES-2132 |
Symploca muscorum | Blue-green alga ; Cyanobacteria | ||
|
NIES-510 |
Phormidium mucicola | Blue-green alga ; Cyanobacteria | Freshwater (Stream sediment) | |
|
NIES-4070 |
Nostoc commune | Blue-green alga ; Cyanobacteria | Terrestrial (Nostoc commune) | Drought tolerance ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) |
| Reference |
|---|
|
Hosoya, R., Hamana, K., Isobe, M., Yokota, A.
2005
Polyamine distribution profiles within Cyanobacteria.
Microbiol. Cult. Coll.,
21,
3-8.
Keywords: cyanobacteria; homospermidine; polyamine; spermidine Strain(s): 19, 21, 22, 28, 30, 34, 37, 41, 44, 45, 50, 73, 78, 79, 80, 81, 204, 208, 510, 512, 515, 592, 593, 610, 843, 846, 847, 2093, 2096, 2098, 2100, 2102, 2107, 2108, 2118, 2119, 2123, 2124, 2125, 2126, 2128, 2129, 2131, 2132, 3259, 3275, 3276, 3277 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Gharaie Fathabad, S., Arumanayagam, A. S., Tabatabai, B., Chen, H., Lu, J., Sitther, V. 2019 Augmenting Fremyella diplosiphon cellular lipid content and unsaturated fatty acid methyl esters via sterol desaturase gene overexpression. Appl. Biochem. Biotechnol., 189, 1127-1140. Keywords: Alkane; Biofuel; Cyanobacteria; Sterol desaturase; Transcript abundance Strain(s): 2100, 2107, 3585 PubMed: 31168708 DOI: 10.1007/s12010-019-03055-5 Churro, C., Semedo-Aguiar, A. P., Silva, A.D., Pereira-Leal, J. B., Leite, R. B. 2020 A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Sci Rep, 10, 8679 (article ID). Strain(s): 25, 2100, 2111 PubMed: 32457360 DOI: 10.1038/s41598-020-64774-y Baqué, M., Napoli, A., Fagliarone, C., Moeller, R., de Vera, J. P., Billi, D. 2020 Carotenoid raman signatures are better preserved in dried cells of the desert cyanobacterium Chroococcidiopsis than in hydrated counterparts after high-dose gamma irradiation. Life-Basel, 10, 83 (article ID). Keywords: biosignatures; extremophiles; ionizing radiation; Raman spectroscopy; cyanobacteria; Mars exploration Strain(s): 25, 2100, 4073, 4103, 4105 PubMed: 32521820 DOI: 10.3390/life10060083 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 Carrell, A. A., Lawrence, T. J., Cabugao, K. G. M., Carper, D. L., Pelletier, D. A., Lee, J. H., Jawdy, S., Grimwood, J., Schmutz, J., Hanson, P. J., Shaw, A. J., Weston, D. J. 2022 Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming. New Phytol., 234, 2111-2125. Keywords: climate change; heat tolerance; microbiome transfer; moss; peatland; Sphagnum; symbiosis; synthetic communities Strain(s): 25, 81, 2098, 2100, 2107 DOI: 10.1111/nph.18072 Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967. Strain(s): 25, 73, 267, 2100, 2107, 2109, 2111, 2130, 3755, 3756, 3757, 3974, 4073, 4102, 4103, 4105, 4106 PubMed: 37603862 DOI: 10.1021/acschembio.3c00112 Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID). Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106 PubMed: 38711016 DOI: 10.1186/s12862-024-02244-z |
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