A DSL for data-driven computational pipelines
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A flexible pipeline for complete analysis of bacterial genomes
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
GCP for Bioinformatics Researchers
Assembly and binning of metagenomes
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
ChIP-seq peak-calling, QC and differential analysis pipeline.
Amplicon sequencing analysis workflow using DADA2 and QIIME2
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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