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FIX: Address numpy and traits deprecations #3699

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effigies merged 14 commits into nipy:master from effigies:fix/deprecations
Nov 18, 2024

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@effigies effigies commented Nov 18, 2024

To unlock projects that want to support numpy 2, we need to disable our pin and fix some bugs that were probably generated in the 2to3 transition, namely using np.savetxt(..., fmt=b'...').

Started to test on Python 3.13, but we're blocked on a release of traits. Ran with latest master and addressed deprecations.

@mgxd Would you be up for a quick review?

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codecov bot commented Nov 18, 2024
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Codecov Report

Attention: Patch coverage is 90.00000% with 5 lines in your changes missing coverage. Please review.

Project coverage is 72.86%. Comparing base (1ccee34) to head (ddb73ac).
Report is 65 commits behind head on master.

Files with missing lines Patch % Lines
nipype/algorithms/rapidart.py 25.00% 3 Missing ⚠️
nipype/algorithms/confounds.py 50.00% 1 Missing ⚠️
nipype/interfaces/fsl/epi.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@
## master #3699 +/- ##
==========================================
+ Coverage 70.81% 72.86% +2.04% 
==========================================
 Files 1277 1278 +1 
 Lines 59153 59305 +152 
 Branches 8590 0 -8590 
==========================================
+ Hits 41890 43212 +1322 
+ Misses 16119 16093 -26 
+ Partials 1144 0 -1144 

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Okay, moving to tox because this CI is a pain to work with.

@effigies effigies force-pushed the fix/deprecations branch 2 times, most recently from 0aafdfc to d4f56eb Compare November 18, 2024 14:46
@effigies effigies merged commit 5dc8701 into nipy:master Nov 18, 2024
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@effigies effigies deleted the fix/deprecations branch November 18, 2024 18:02
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@mgxd mgxd mgxd approved these changes

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