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Commit d4f56eb

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chore(ci): Run GHA with tox
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‎.github/workflows/tests.yml‎

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@@ -1,22 +1,11 @@
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name: Stable tests
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# This file tests the claimed support range of nipype including
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#
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# * Operating systems: Linux, OSX
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# * Dependencies: minimum requirements, optional requirements
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# * Installation methods: setup.py, sdist, wheel, archive
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name: Tox
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on:
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push:
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branches:
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- master
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- maint/*
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tags:
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- "*"
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branches: [ master, main, 'maint/*' ]
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tags: [ '*' ]
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pull_request:
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branches:
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- master
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- maint/*
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branches: [ master, main, 'maint/*' ]
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schedule:
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# 8am EST / 9am EDT Mondays
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- cron: "0 13 * * 1"
@@ -26,27 +15,28 @@ defaults:
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shell: bash
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concurrency:
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group: tests-${{ github.ref }}
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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permissions: {}
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permissions:
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contents: read
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env:
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# Force tox and pytest to use color
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FORCE_COLOR: true
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jobs:
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build:
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permissions:
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contents: read # to fetch code (actions/checkout)
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v5
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with:
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python-version: 3
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- run: pip install --upgrade build twine
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- name: Build sdist and wheel
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run: python -m build
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- run: twine check dist/*
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- name: Install the latest version of uv
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uses: astral-sh/setup-uv@v3
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- run: uv build
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- run: uvx twine check dist/*
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- uses: actions/upload-artifact@v4
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with:
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name: dist
@@ -82,70 +72,51 @@ jobs:
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- name: Run tests
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run: pytest --doctest-modules -v --pyargs nipype
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stable:
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test:
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# Check each OS, all supported Python, minimum versions and latest releases
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permissions:
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contents: read # to fetch code (actions/checkout)
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: ["ubuntu-22.04"]
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python-version: ["3.9", "3.10", "3.11", "3.12"]
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check: ["test"]
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pip-flags: [""]
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depends: ["REQUIREMENTS"]
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deb-depends: [false]
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nipype-extras: ["doc,tests,profiler"]
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include:
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- os: ubuntu-22.04
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python-version: "3.9"
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check: test
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pip-flags: ""
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depends: REQUIREMENTS
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deb-depends: true
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nipype-extras: doc,tests,profiler,duecredit,ssh
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- os: ubuntu-20.04
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python-version: "3.9"
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check: test
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pip-flags: ""
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depends: REQUIREMENTS
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deb-depends: true
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nipype-extras: doc,tests,nipy,profiler,duecredit,ssh
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os: ["ubuntu-latest"]
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python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
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dependencies: [none, full, pre]
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# include:
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# - os: ubuntu-latest
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# python-version: "3.9"
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# dependencies: min
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exclude:
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# Skip some intermediate versions for full tests
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- python-version: "3.10"
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dependencies: full
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- python-version: "3.11"
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dependencies: full
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# Do not test pre-releases for versions out of SPEC0
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- python-version: "3.9"
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dependencies: pre
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- python-version: "3.10"
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dependencies: pre
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env:
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DEPENDS: ${{ matrix.depends }}
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CHECK_TYPE: ${{ matrix.check }}
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EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }}
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INSTALL_DEB_DEPENDENCIES: ${{ matrix.deb-depends }}
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NIPYPE_EXTRAS: ${{ matrix.nipype-extras }}
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INSTALL_TYPE: pip
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CI_SKIP_TEST: 1
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DEPENDS: ${{ matrix.dependencies }}
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steps:
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- uses: actions/checkout@v4
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- name: Install the latest version of uv
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uses: astral-sh/setup-uv@v3
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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- name: Display Python version
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run: python -c "import sys; print(sys.version)"
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- name: Create virtual environment
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run: tools/ci/create_venv.sh
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- name: Build archive
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- name: Install tox
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run: |
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source tools/ci/build_archive.sh
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echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV
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- name: Install Debian dependencies
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run: tools/ci/install_deb_dependencies.sh
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if: ${{ matrix.os == 'ubuntu-latest' }}
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- name: Install dependencies
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run: tools/ci/install_dependencies.sh
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- name: Install Nipype
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run: tools/ci/install.sh
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- name: Run tests
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run: tools/ci/check.sh
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if: ${{ matrix.check != 'skiptests' }}
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- uses: codecov/codecov-action@v5
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uv tool install tox --with=tox-uv --with=tox-gh-actions
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- name: Show tox config
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run: tox c
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- name: Run tox
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run: tox -v --exit-and-dump-after 1200
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- uses: codecov/codecov-action@v4
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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if: ${{ always() }}

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