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HOXA2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HOXA2
Identifiers
Aliases HOXA2 , HOX1K, MCOHI, homeobox A2
External IDsOMIM: 604685; MGI: 96174; HomoloGene: 4901; GeneCards: HOXA2; OMA:HOXA2 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr. Chromosome 7 (human) [1]
Band 7p15.2Start27,100,354 bp [1]
End27,102,686 bp [1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr. Chromosome 6 (mouse)[2]
Band 6 B3|6 25.4 cMStart52,139,397 bp [2]
End52,141,811 bp [2]
RNA expression pattern
Bgee
Human Mouse (ortholog)
  • mucosa of transverse colon

  • Descending thoracic aorta

  • C1 segment

  • gastric mucosa

  • left uterine tube

  • ascending aorta

  • muscle layer of sigmoid colon

  • body of uterus

  • tibial arteries

  • rectum
  • neuromere

  • rhombomere

  • tail of embryo

  • thoracic diaphragm

  • main bronchus

  • tongue

  • genital tubercle

  • female urethra

  • hair

  • ureter
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3199

15399

Ensembl

ENSG00000105996

ENSMUSG00000014704

UniProt

O43364

P31245

RefSeq (mRNA)

NM_006735

NM_010451

RefSeq (protein)

NP_006726

NP_034581

Location (UCSC)Chr 7: 27.1 – 27.1 Mb Chr 6: 52.14 – 52.14 Mb
PubMed search[3] [4]
Wikidata

Homeobox protein Hox-A2 is a protein that in humans is encoded by the HOXA2 gene.[5]

Function

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In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. The encoded protein may be involved in the placement of hindbrain segments in the proper location along the anterior-posterior axis during development. Two transcript variants encoding two different isoforms have been found for this gene, with only one of the isoforms containing the homeodomain region.[6]

HOXA2 controls the embryonic development of the lower and middle part of the face and of the middle ear. Mutations in it are known to cause microtia, hearing impairment, and cleft palate.

See also

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References

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  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000105996Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000014704Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Scott MP (November 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459. S2CID 13370372.
  6. ^ "Entrez Gene: HOXA2 homeobox A2".

Further reading

[edit ]
Stub icon

This article on a gene on human chromosome 7 is a stub. You can help Wikipedia by expanding it.

(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2 /EREBP -related factors
(0.6) Miscellaneous

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