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RaggedExperiment
This is the released version of RaggedExperiment; for the devel version, see RaggedExperiment.
Representation of Sparse Experiments and Assays Across Samples
Bioconductor version: Release (3.22)
This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.
Author: Martin Morgan [aut], Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Lydia King [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("RaggedExperiment")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RaggedExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RaggedExperiment")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.