RaggedExperiment

This is the development version of RaggedExperiment; for the stable release version, see RaggedExperiment.

Representation of Sparse Experiments and Assays Across Samples

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DOI: 10.18129/B9.bioc.RaggedExperiment

Bioconductor version: Development (3.23)

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.

Author: Martin Morgan [aut], Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Lydia King [ctb]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("RaggedExperiment")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RaggedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.