MultiDataSet

This is the released version of MultiDataSet; for the devel version, see MultiDataSet.

Implementation of MultiDataSet and ResultSet

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DOI: 10.18129/B9.bioc.MultiDataSet

Bioconductor version: Release (3.22)

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Xavier Escrib<c3><a0> Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("MultiDataSet")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MultiDataSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiDataSet")

Adding a new type of data to MultiDataSet objects HTML R Script

Introduction to MultiDataSet HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Software

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License file LICENSE

Depends R (>= 4.1), Biobase

Imports BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma

System Requirements

URL

Suggests brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment

Linking To

Enhances

Depends On Me MEAL

Imports Me biosigner, omicRexposome, phenomis, ropls

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiDataSet_1.38.0.tar.gz

Windows Binary (x86_64) MultiDataSet_1.37.0.zip (64-bit only)

macOS Binary (x86_64) MultiDataSet_1.38.0.tgz

macOS Binary (arm64) MultiDataSet_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MultiDataSet

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiDataSet

Bioc Package Browser https://code.bioconductor.org/browse/MultiDataSet/

Package Short Url https://bioconductor.org/packages/MultiDataSet/

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