GEOquery

This is the released version of GEOquery; for the devel version, see GEOquery.

Get data from NCBI Gene Expression Omnibus (GEO)

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GEOquery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Details

See More

Suggests knitr, rmarkdown, BiocGenerics, testthat, covr, markdown, quarto, DropletUtils, SingleCellExperiment

Linking To

Enhances

Depends On Me DrugVsDisease, SCAN.UPC, dyebiasexamples, GSE103322, GSE13015, GSE62944

Imports Me bigmelon, ChIPXpress, DExMA, EGAD, minfi, Moonlight2R, MoonlightR, phantasus, recount, BeadArrayUseCases, BioPlex, GSE13015, healthyControlsPresenceChecker, geneExpressionFromGEO, RCPA

Suggests Me AUCell, autonomics, COTAN, ctsGE, dearseq, diffcoexp, dyebias, EpiDISH, EpiMix, fgsea, FLAMES, GeneExpressionSignature, GenomicOZone, GeoTcgaData, methylclock, multiClust, MultiDataSet, omicsPrint, phantasusLite, quantiseqr, RegEnrich, RGSEA, Rnits, runibic, skewr, TargetScore, zFPKM, ath1121501frmavecs, airway, antiProfilesData, muscData, prostateCancerCamcap, prostateCancerGrasso, prostateCancerStockholm, prostateCancerTaylor, prostateCancerVarambally, RegParallel, AnnoProbe, BED, easybio, evanverse, fdrci, maGUI, metaMA, MLML2R, NACHO, TcGSA, tinyarray

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.