diffcoexp

This is the released version of diffcoexp; for the devel version, see diffcoexp.

Differential Co-expression Analysis

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DOI: 10.18129/B9.bioc.diffcoexp

Bioconductor version: Release (3.22)

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <wenbin.wei2 at durham.ac.uk>

Citation (from within R, enter citation("diffcoexp")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")

About diffcoexp PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel

Version 1.30.0

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License GPL (>2)

Depends R (>= 3.5), WGCNA, SummarizedExperiment

Imports stats, DiffCorr, psych, igraph, BiocGenerics

System Requirements

URL https://github.com/hidelab/diffcoexp

Suggests GEOquery, RUnit

Linking To

Enhances

Depends On Me

Imports Me ExpHunterSuite

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diffcoexp_1.30.0.tar.gz

Windows Binary (x86_64) diffcoexp_1.29.0.zip

macOS Binary (x86_64) diffcoexp_1.30.0.tgz

macOS Binary (arm64) diffcoexp_1.30.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/diffcoexp

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diffcoexp

Bioc Package Browser https://code.bioconductor.org/browse/diffcoexp/

Package Short Url https://bioconductor.org/packages/diffcoexp/

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