Module Biocaml_genomeMap.Make.Selection (.ml)

A collection of non-overlapping regions (e.g. a set of CpG islands)

module Selection:

sig

type t

val inter  : t ->
 t -> t

val union  : t ->
 t -> t

val diff  : t ->
 t -> t

val size  : t -> int

val intersects  : t -> Biocaml_genomeMap.Make.location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

val overlap  : t -> Biocaml_genomeMap.Make.location -> int

val to_stream  : t ->
 Biocaml_genomeMap.Make.location Stream.t

val of_stream  : Biocaml_genomeMap.Make.location Stream.t ->
 t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e

end