Module Biocaml_genomeMap.Make.LSet (.ml)

A set of locations (e.g. a set of gene loci)

module LSet:

sig

type t

val to_stream  : t -> Biocaml_genomeMap.Make.location Stream.t

val of_stream  : Biocaml_genomeMap.Make.location Stream.t -> t

val intersects  : t -> Biocaml_genomeMap.Make.location -> bool

intersects lset loc returns true if loc has a non-empty intersection with one of the locations in lset, and returns false otherwise

val closest  : t ->
 Biocaml_genomeMap.Make.location ->
 (Biocaml_genomeMap.Make.location * int) option

closest lset loc returns the location in lset that is the closest to loc, along with the actual (minimal) distance. Returns None if there is no location in lset that comes from the same chromosome than loc.

val intersecting_elems  : t ->
 Biocaml_genomeMap.Make.location -> Biocaml_genomeMap.Make.location Stream.t

intersecting_elems lset loc returns a stream of all locations in lset that intersect loc.

end