An analysis pipeline for Nanostring nCounter expression data.
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Sep 1, 2026 - Nextflow
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nanostring
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NAnostring quality Control dasHbOard.
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Aug 7, 2026 - R
Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.
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Sep 9, 2022
A web app for easier NanoString gene expression analysis
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Jun 11, 2025 - R
Python pipeline for Nanostring nCounter gene expression analysis — parse, QC, normalize, DE, pathway scoring
python bioinformatics gene-expression differential-expression nanostring ncounter nanostring-ncounter
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Aug 7, 2026 - Python
Multimodal profiling data and analysis code for HER2/neu-specific TCR-T cells, enabling comparative analysis of distinct TCR clonotypes and their activation programs underlying differential cytotoxic efficacy.
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Mar 22, 2026 - Jupyter Notebook
Analyses for the manuscript modeling LASV Nigeria 0043 small particle aerosol infection in AGMs
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Apr 3, 2026 - R
Targeted transcriptomic and proteomic analysis data and code
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Aug 21, 2026 - R
This repository contains the two R scripts used in the paper titled Treg fitness as a biomarker for disease activity in Juvenile Idiopathic Arthritis by M. H. Attrill et al. 2025.
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Feb 7, 2025 - R
NanostrIng MB cLassifiEr
training classifier gene rna-seq shiny next-generation-sequencing expression classification support-vector-machines subgroups svm-model shiny-applications gene-expression-signatures normalization medulloblastoma nanostring ncounter
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Apr 25, 2017 - R
Nanostring analyses for the Geisbert lab manuscript describing treatment of LASV in AGMs using 4' FIU antiviral
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Jun 25, 2026 - R
Nanostring analyses for the Connor & Geisbert lab manuscript describing a LASV infection model in AGMs
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Jun 25, 2026 - R
NanoString classifier based on NGS training set
classifier probability ngs next-generation-sequencing gene-expression classification support-vector-machines normalization gene-expression-profiles nanostring
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Apr 4, 2017 - R
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
bioinformatics cancer spatial copper spatial-analysis single-cell spatial-data-analysis nanostring single-cell-rna-seq spatial-transcriptomics rhapsody neuroblastoma geomx copper-chelation geomx-dsp
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Sep 25, 2024 - R
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