🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
data-science bioinformatics biomarker-discovery immunotherapy vaccine immune-repertoire airr immunomics
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Aug 18, 2026 - R
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immunotherapy
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Sep 4, 2026 - Python
Medea: An AI agent for therapeutic reasoning across biological contexts
omics immunotherapy ai-agents target-discovery tool-use therapeutics synthetic-lethality foundation-models agentic-ai ai-scientist therapeutic-ai
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Jul 17, 2026 - Python
Generalizable AI predicts immunotherapy outcomes across cancers and treatments
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May 19, 2026 - Jupyter Notebook
🦠 List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
bioinformatics immunotherapy vaccine immune-repertoire bcr-repertoire covid19 covid19-data airr immunomics
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May 21, 2020
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
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Nov 14, 2021 - Python
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
manuscript biomarker-discovery immunotherapy reproducible-analysis analysis-report tumor-immunogenicity
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Sep 16, 2021 - R
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
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Aug 20, 2024 - Python
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
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Feb 28, 2025 - Python
Snakemake-based computational workflow for neoantigen prediction from diverse sources
snakemake gene-fusion indels immunotherapy vaccine peptide snakemake-workflow splicing epitope neoantigens exitron neoepitope
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Jul 6, 2026 - Python
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
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Jun 29, 2018 - Python
Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution
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May 4, 2022 - HTML
A classifier for tumor microenvironment subtype based on ensemble machine learning models
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Jul 20, 2025 - R
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
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May 8, 2026 - Perl
Web Companion for Generalizable AI predicts immunotherapy outcomes across cancers and treatments
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Oct 5, 2025 - Jupyter Notebook
A poster showing TIGS project at BioForum2019, ShanghaiTech University
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Nov 18, 2019 - HTML
Analysis of single-cell RNA-seq data from patients with immunotherapy-related colitis.
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May 5, 2025 - JavaScript
Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods
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May 8, 2026 - Python
A Community Curated Immune Resource Database in R format
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Sep 24, 2019 - R
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