CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
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Apr 3, 2024 - Python
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immunoinformatics
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Jul 7, 2022 - R
Statistical classifier for immune repertoires
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Oct 2, 2022 - Python
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
bioinformatics data-analysis immunology tcr ig bioinformatics-analysis immunoinformatics tcr-repertoire ig-repertoire
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Jun 8, 2020 - R
An R package to analyze single-cell V(D)J data
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Nov 13, 2023 - R
Comparison of Adaptive Immune Receptor Repertoires
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Jan 29, 2025 - C++
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
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Nov 2, 2021 - R
🐶 hlabud: HLA genotype analysis in R
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Apr 11, 2025 - R
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
bioinformatics r research datascience rstats peptides immunoinformatics vaccine epitope-prediction-methods peptide-data immunological-bioinformatics encoding-peptides
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Feb 21, 2018 - R
WES HLA Typing based on multiple alternative tools
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Mar 8, 2021 - Python
Highly informative TCR representation model
bioinformatics transformer immunology tcr immunoinformatics tcr-repertoire contrastive-learning protein-language-model
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Nov 26, 2025 - Python
Fast string distance computation in Python
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Dec 21, 2022 - Python
Sequence-based prediction of peptide-TCR interactions using paired chain data
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Feb 2, 2026 - Python
Standardise TR/MH/IG data
bioinformatics tr immunology antibody t-cell-receptor standardization mhc tcr ig data-cleaning immunoglobulin immunoinformatics mh bioinformatics-tool bcr b-cell-receptor major-histocompatibility-complex
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Jul 27, 2026 - Python
Accompanying Repository to TCR-TRANSLATE paper.
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Jun 26, 2026 - Python
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
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May 8, 2026 - Perl
Bayesian inference of Activation of TCR by Mutant Antigens
immunology bayesian-inference immunoinformatics epitope-prediction-methods tcr-epitope epitope-immunogenicity-prediction epitope-datasets peptide-bioinformatics t-cell-response
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Jun 6, 2026 - Python
Fast trie-based search for TCR sequences with Levenshtein and substitution matrix support
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May 3, 2026 - C++
ESMDesign uses ESM-IF1 for the design of fragments within multichain proteins
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Mar 28, 2024 - Python
Generation probability, diversity, and simulation for AIRR-seq TCR/BCR repertoires, from graph models of decomposed receptor sequences. Python, C-accelerated.
python diversity bioinformatics genetics markov-chain computational-biology lempel-ziv generative-model graph-theory immunology tcr immunoinformatics sequence-analysis pgen bcr cdr3 immune-repertoire vdj airr-seq airr
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Aug 15, 2026 - Python
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