Integrating MAGMA gene-level genetic association scores with single-cell transcriptional perturbation profiles to identify cell-type- and state-specific genetic–transcriptomic convergence.
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Aug 19, 2026 - Python
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brca2
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Reproducible pipeline for cross-GWAS identification of recurrent moderate-effect BRCA1/2 breast cancer modifier loci
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Aug 16, 2026 - Python
This repository contains an end-to-end tumour-only somatic variant-calling pipeline (GATK Mutect2 + snpEff) for triple-negative breast cancer whole-exome data, focused on BRCA1/BRCA2/TP53, built on Google Colab via Visual Studio Code.
bioinformatics ngs visual-studio-code cancer-genomics multiqc variant-calling somatic-mutations wes bwa-mem whole-exome-sequencing breast-cancer snpeff mutect2 fastqc google-colab gatk4 sra-toolkit tp53 brca2 brca1
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Jul 6, 2026 - HTML
Lab profile
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Aug 2, 2026
This repository contains an end-to-end, fully GUI/web-based dual-receptor molecular docking and ADMET profiling pipeline of four cyanobacterial natural products — scytonemin, phycocyanobilin, lyngbyabellin A and nostocarboline — against the BRCA2 DNA-binding domain using PyMOL, AutoDock Vina, PLIP, SwissADME, and ADMETlab 3.0.
bioinformatics cheminformatics protein-data-bank protein-ligand-docking pymol drug-discovery pubchem homology-modeling natural-products cyanobacteria cadd autodock-vina plip p2rank brca2 admet-prediction swissadme admetlab3
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Jul 6, 2026
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